GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005106-TA|BGIBMGA005106-PA|IPR001849|Pleckstrin-like,
IPR000299|Band 4.1
         (627 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   4.3  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    24   4.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   5.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   9.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   9.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)

Query: 91  DRSNGPCPATPPPPRSLS 108
           D    P PA PPPP S S
Sbjct: 334 DSDTPPKPAPPPPPPSSS 351


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 301 ELQAQLEGGPPARQ-DITHVPELAGYLKYL 329
           +L A+  GG  +R  DI H P LA  L+YL
Sbjct: 36  DLFARCMGGINSRNMDIEHDPGLAAVLQYL 65


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 1   MHKPLRIQLPDLRFIDCKIDFSIDTFSAVIQLCKN 35
           +H      +  L F DC +   +  FSA+ ++ +N
Sbjct: 76  LHTATNYFVTSLAFADCLVGLVVMPFSAIYEVLEN 110


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 85   GSSNSLDRSNGPCPATPPPPRS 106
            GS+ ++  S  P P  PPPPR+
Sbjct: 1846 GSARNIPVSGSPEP-PPPPPRN 1866


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 282 GASAGNASAPEDEIDAALCELQA 304
           GA  G  +  E+E+ AAL ++Q+
Sbjct: 583 GAGGGRRAYTEEELQAALRDIQS 605


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,167
Number of Sequences: 429
Number of extensions: 7080
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 5
length of query: 627
length of database: 140,377
effective HSP length: 62
effective length of query: 565
effective length of database: 113,779
effective search space: 64285135
effective search space used: 64285135
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)