GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005104-TA|BGIBMGA005104-PA|undefined
         (64 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   0.87 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    19   6.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    18   8.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 0.87
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 35  NHEYADCDTELIRVVFIGGIELVIQSLGV 63
           N +YAD    + +   IGGI   I SL V
Sbjct: 463 NVDYADTGAYMCQASSIGGITRDISSLVV 491


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 33  DCNHEYADCDTELIRVVF 50
           DC  EY+  +   I++VF
Sbjct: 190 DCTIEYSTGNFTCIQIVF 207


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 6/16 (37%), Positives = 13/16 (81%)

Query: 43  TELIRVVFIGGIELVI 58
           T  +++VF+G +EL++
Sbjct: 138 TTYMQLVFMGIVELIM 153


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.145    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9850
Number of Sequences: 429
Number of extensions: 119
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 64
length of database: 140,377
effective HSP length: 44
effective length of query: 20
effective length of database: 121,501
effective search space:  2430020
effective search space used:  2430020
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.3 bits)
S2: 35 (18.2 bits)