GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005103-TA|BGIBMGA005103-PA|undefined
         (127 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo...    28   0.52 
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    25   2.8  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    25   2.8  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   3.7  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    25   4.8  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    24   8.5  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    24   8.5  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    24   8.5  
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    24   8.5  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    24   8.5  

>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 246

 Score = 27.9 bits (59), Expect = 0.52
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 63 GYCADTL--LQCGLDVAAYGWGAHVLRHVIRQVP 94
          GYCA+ +   Q  L V  +G+  +  RHV+R +P
Sbjct: 56 GYCAELMNFYQRRLRVDVWGFSGYTSRHVLRYLP 89


>SPAC13C5.02 |dre4||DNA replication protein
          Dre4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 3  TSSNRVLRFETSQELNATEELEEQKKS 29
          T+S   L F TS++L   E  EE+K S
Sbjct: 46 TASQASLAFNTSEKLFVNENAEERKNS 72


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 21  EELEEQKKSMRPKSERAKKSKGATQKWMMGLLLYN 55
           EE+ +  K +  +S++A ++K +T +W+  L LYN
Sbjct: 561 EEIGDYVKELDEESKKAIENKDSTSEWL--LHLYN 593


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 12 ETSQELNAT--EELEEQKKSMRPKSERAKKSKGAT 44
          +  +E+N    EEL+ + + +R K+ER ++++G T
Sbjct: 62 QEQEEINRKKEEELKSKFEKLRQKNERRRRTQGKT 96


>SPAC56F8.03 |||translation initiation factor IF2
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 13 TSQELNATEELEEQKKSMRPKSER--AKKSKGATQK 46
          TSQ+    +EL E+ +++   SE+  +KK KG   K
Sbjct: 31 TSQDSPQNDELAEKSENLAVSSEKTTSKKKKGKKNK 66


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 12  ETSQELNATEELEEQKKSMRPKSERAKKSKGATQK 46
           +T+Q   A E+L EQK       E  ++ KG + K
Sbjct: 869 KTAQLNEANEKLYEQKTQHTNPQENRRRDKGGSVK 903


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 15  QELNATEELEEQKKSMRP 32
           +E   TEE EE KKS+ P
Sbjct: 261 EEKENTEETEESKKSINP 278


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 53  LYNTCLAPLSGYCADTLLQCGLDVAAYGWGAHVLRHVIR--QVPNENHLDATFVKKKKSY 110
           ++  C       C D ++     +    WG  V++H+I     P++  +  + +K+ +SY
Sbjct: 424 IFENCKEKDKRTCLDEIINNMDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESY 483


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 103 FVKKKKSYFFPHDQANEDHRP 123
           F KKK SYF+  D  N  + P
Sbjct: 3   FGKKKVSYFYDEDVGNYHYGP 23


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 74  LDVAAYGWGAHVLRHVIRQV 93
           ++ AA  WG   LRH IR +
Sbjct: 176 INKAAESWGIRCLRHEIRDI 195


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.129    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,419
Number of Sequences: 5004
Number of extensions: 22386
Number of successful extensions: 94
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 11
length of query: 127
length of database: 2,362,478
effective HSP length: 65
effective length of query: 62
effective length of database: 2,037,218
effective search space: 126307516
effective search space used: 126307516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)