GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005103-TA|BGIBMGA005103-PA|undefined
         (127 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   1.1  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   3.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   4.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   4.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   4.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   5.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   5.6  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 4   SSNRVLRFETSQELNATEELEEQKKSMRPKSERAKKSKGATQK-----WMMGLLLYNTCL 58
           + NR L     Q+L+    L E +  +  +++RAK  K + QK      +M   LYN   
Sbjct: 40  AENRYLTERRRQQLSRDLGLNEAQIKIWFQNKRAKIKKASGQKNPLALQLMAQGLYNHST 99

Query: 59  APLS 62
            PL+
Sbjct: 100 VPLT 103


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 4  SSNRVLRFETSQELNATEELEEQKKSMRPKSERAKKSKGATQKWMMGLLL 53
          + NR L     Q+L+    L E +  +  +++RAK  K + QK  + L L
Sbjct: 40 AENRYLTERRRQQLSRDLGLTEAQIKIWFQNKRAKIKKASGQKNPLALQL 89


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 100 DATFVKKKKSYFFPHDQANE 119
           D  FV +K+SYF     +NE
Sbjct: 97  DTFFVNEKQSYFHIATTSNE 116


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 100 DATFVKKKKSYFFPHDQANE 119
           D  FV +K+SYF     +NE
Sbjct: 97  DTFFVNEKQSYFHIATTSNE 116


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 100 DATFVKKKKSYFFPHDQANE 119
           D  FV +K+SYF     +NE
Sbjct: 36  DTFFVNEKQSYFHIATTSNE 55


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 72  CGLDVAAYGW 81
           C L +A+YGW
Sbjct: 174 CSLRMASYGW 183


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 72  CGLDVAAYGW 81
           C L +A+YGW
Sbjct: 174 CSLRMASYGW 183


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.129    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,134
Number of Sequences: 429
Number of extensions: 1270
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 127
length of database: 140,377
effective HSP length: 51
effective length of query: 76
effective length of database: 118,498
effective search space:  9005848
effective search space used:  9005848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)