GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005100-TA|BGIBMGA005100-PA|undefined
         (67 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   0.95 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    19   3.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    19   5.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   6.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   6.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   6.7  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 0.95
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 27 NGLQQTNGPDSLPSEPEHEPNARTRRTSLNST 58
          N  QQ N P    S P+H  ++ +   +  +T
Sbjct: 54 NYAQQHNSPSPTGSSPQHSGSSASTSPAARTT 85


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated
          chloride channel protein.
          Length = 428

 Score = 19.4 bits (38), Expect = 3.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 36 DSLPSEPEHEPNARTRRTSLNSTVVFGPVT 65
          D LP +P+     R  +    +TVV+  VT
Sbjct: 39 DLLPEDPKLYDKMRPPKKDGQATVVYFHVT 68


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 5.1
 Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 2/23 (8%)

Query: 11  HAFKLERLVTQLRSKFNGLQQTN 33
           H F L  L  Q R  FNG+Q  N
Sbjct: 285 HLFCL--LDVQWRIPFNGIQMPN 305


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 13/43 (30%), Positives = 17/43 (39%)

Query: 16  ERLVTQLRSKFNGLQQTNGPDSLPSEPEHEPNARTRRTSLNST 58
           E  VTQ R        T GP+ + +     PN  T  T+   T
Sbjct: 402 ENPVTQKREGGPPTGATTGPNEIVTCTNCGPNPCTHTTTNGCT 444


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 13/43 (30%), Positives = 17/43 (39%)

Query: 16  ERLVTQLRSKFNGLQQTNGPDSLPSEPEHEPNARTRRTSLNST 58
           E  VTQ R        T GP+ + +     PN  T  T+   T
Sbjct: 422 ENPVTQKREGGPPTGATTGPNEIVTCTNCGPNPCTHTTTNGCT 464


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 13/43 (30%), Positives = 17/43 (39%)

Query: 16  ERLVTQLRSKFNGLQQTNGPDSLPSEPEHEPNARTRRTSLNST 58
           E  VTQ R        T GP+ + +     PN  T  T+   T
Sbjct: 371 ENPVTQKREGGPPTGATTGPNEIVTCTNCGPNPCTHTTTNGCT 413


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.127    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,143
Number of Sequences: 429
Number of extensions: 623
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 67
length of database: 140,377
effective HSP length: 45
effective length of query: 22
effective length of database: 121,072
effective search space:  2663584
effective search space used:  2663584
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.7 bits)
S2: 35 (18.2 bits)