GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005099-TA|BGIBMGA005099-PA|undefined
         (256 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     27   0.22 
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    22   4.8  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    22   4.8  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    22   4.8  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    22   4.8  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   4.8  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   4.8  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   4.8  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   4.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 44  TMHQIQDATPSIETYDTFVNPVVNWPVGSQFAPAYDPYRHIYGCP 88
           T HQ Q    S++  +  V  V +  VGS + P  + +   YG P
Sbjct: 167 TYHQFQTVVASMDPPEPPVPTVTSACVGSAYTPLKEDHDDHYGVP 211


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 72  SQFAPAYDPYRHIYGCPDPMSLPTYTSYNPMPPFG 106
           + + P Y    +I   P P+  P Y    P  P G
Sbjct: 96  NNYKPLYYNINYIEQIPVPVPFPVYYGNFPPRPMG 130


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 72  SQFAPAYDPYRHIYGCPDPMSLPTYTSYNPMPPFG 106
           + + P Y    +I   P P+  P Y    P  P G
Sbjct: 96  NNYKPLYYNINYIEQIPVPVPFPVYYGNFPPRPMG 130


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 72  SQFAPAYDPYRHIYGCPDPMSLPTYTSYNPMPPFG 106
           + + P Y    +I   P P+  P Y    P  P G
Sbjct: 96  NNYKPLYYNINYIEQIPVPVPFPVYYGNFPPRPMG 130


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 72  SQFAPAYDPYRHIYGCPDPMSLPTYTSYNPMPPFG 106
           + + P Y    +I   P P+  P Y    P  P G
Sbjct: 96  NNYKPLYYNINYIEQIPVPVPFPVYYGNFPPRPMG 130


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 72  SQFAPAYDPYRHIYGCPDPMSLPTYTSYNPMPPFG 106
           + + P Y    +I   P P+  P Y    P  P G
Sbjct: 329 NNYKPLYYNINYIEQIPVPVPFPVYYGNFPPRPMG 363


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 72  SQFAPAYDPYRHIYGCPDPMSLPTYTSYNPMPPFG 106
           + + P Y    +I   P P+  P Y    P  P G
Sbjct: 329 NNYKPLYYNINYIEQIPVPVPFPVYYGNFPPRPMG 363


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 72  SQFAPAYDPYRHIYGCPDPMSLPTYTSYNPMPPFG 106
           + + P Y    +I   P P+  P Y    P  P G
Sbjct: 329 NNYKPLYYNINYIEQIPVPVPFPVYYGNFPPRPMG 363


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 72  SQFAPAYDPYRHIYGCPDPMSLPTYTSYNPMPPFG 106
           + + P Y    +I   P P+  P Y    P  P G
Sbjct: 318 NNYKPLYYNINYIEQIPVPVPFPVYYGNFPPRPMG 352


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 82  RHIYGCPDPMSLPTYTSYNPMPPFGSE 108
           +H  G   PMS  +Y  Y+P    G +
Sbjct: 127 QHNNGYASPMSTSSYDPYSPNSKIGRD 153


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,132
Number of Sequences: 429
Number of extensions: 2440
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 10
length of query: 256
length of database: 140,377
effective HSP length: 56
effective length of query: 200
effective length of database: 116,353
effective search space: 23270600
effective search space used: 23270600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)