GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005098-TA|BGIBMGA005098-PA|undefined
         (68 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   0.57 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   1.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   1.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   1.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   2.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   3.0  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    20   3.0  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    20   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   3.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   7.0  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    19   7.0  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
          channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 0.57
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 29 VNDILLDTNVQLPTSDFWADP 49
          V+++L+D  +      FW DP
Sbjct: 50 VSEVLMDFTLDFYFRQFWTDP 70


>AY739659-1|AAU85298.1|  288|Apis mellifera
          hyperpolarization-activated ion channelvariant T
          protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 1.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 14 YLTTKMQPSPGFPMQ 28
          Y T K +P PG P Q
Sbjct: 19 YGTPKEEPGPGLPGQ 33


>AY739658-1|AAU85297.1|  664|Apis mellifera
          hyperpolarization-activated ion channelvariant L
          protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 1.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 14 YLTTKMQPSPGFPMQ 28
          Y T K +P PG P Q
Sbjct: 19 YGTPKEEPGPGLPGQ 33


>AY280848-1|AAQ16312.1|  632|Apis mellifera
          hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 1.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 14 YLTTKMQPSPGFPMQ 28
          Y T K +P PG P Q
Sbjct: 19 YGTPKEEPGPGLPGQ 33


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated
          chloride channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 6/21 (28%), Positives = 14/21 (66%)

Query: 28 QVNDILLDTNVQLPTSDFWAD 48
          +++D+ ++ +VQL   + W D
Sbjct: 72 KIDDVTMEYSVQLTFREQWLD 92


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated
          chloride channel protein.
          Length = 447

 Score = 19.8 bits (39), Expect = 3.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 29 VNDILLDTNVQLPTSDFWAD 48
          ++DI ++ +VQL   + W D
Sbjct: 73 ISDIKMEYSVQLTFREQWLD 92


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
          protein.
          Length = 105

 Score = 19.8 bits (39), Expect = 3.0
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 8  IQGSDPYLTTKMQPSPGFPMQVN 30
          + G    + T +QP P F +  N
Sbjct: 20 VLGDQNLVNTVLQPRPSFELSKN 42


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
          protein protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 3.0
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 8  IQGSDPYLTTKMQPSPGFPMQVN 30
          + G    + T +QP P F +  N
Sbjct: 22 VLGDQNLVNTVLQPRPSFELSKN 44


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 3.0
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 3/20 (15%)

Query: 4   PTGVIQGSDPYLTTKMQPSP 23
           P GV+Q   P +T    PSP
Sbjct: 975 PGGVVQSQQPIMT---DPSP 991


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
          channel protein.
          Length = 445

 Score = 18.6 bits (36), Expect = 7.0
 Identities = 5/21 (23%), Positives = 11/21 (52%)

Query: 29 VNDILLDTNVQLPTSDFWADP 49
          ++++ +D  +      FW DP
Sbjct: 50 LSEVKMDFTLDFYFRQFWTDP 70


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 18.6 bits (36), Expect = 7.0
 Identities = 7/28 (25%), Positives = 17/28 (60%)

Query: 27  MQVNDILLDTNVQLPTSDFWADPEFLQG 54
           ++++++LLD +  +  +DF    E + G
Sbjct: 111 LKLDNVLLDQDGHIKIADFGMCKEGISG 138


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,651
Number of Sequences: 429
Number of extensions: 741
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 68
length of database: 140,377
effective HSP length: 45
effective length of query: 23
effective length of database: 121,072
effective search space:  2784656
effective search space used:  2784656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)
S2: 35 (18.2 bits)