GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005095-TA|BGIBMGA005095-PA|IPR013655|PAS fold-3,
IPR001610|PAC motif
         (78 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   7.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   9.4  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.0 bits (37), Expect = 7.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 38  TGQYRFLAKSGGYSWVQT 55
           T   RFL   GGY+ + T
Sbjct: 412 TAHNRFLGGIGGYNGLPT 429


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.0 bits (37), Expect = 7.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 36  CETGQYRFLAKSG 48
           C T +YR+ A++G
Sbjct: 264 CPTPEYRWYAQTG 276


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.0 bits (37), Expect = 7.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 36  CETGQYRFLAKSG 48
           C T +YR+ A++G
Sbjct: 264 CPTPEYRWYAQTG 276


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 18.6 bits (36), Expect = 9.4
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 5   PRNSVFVYKRFLGTLAAFEQTILEVVFS 32
           P  + F+   +LG + +F   ++  VF+
Sbjct: 654 PGVTAFIVTSWLGYMNSFVNPVIYTVFN 681


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,044
Number of Sequences: 429
Number of extensions: 564
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 78
length of database: 140,377
effective HSP length: 47
effective length of query: 31
effective length of database: 120,214
effective search space:  3726634
effective search space used:  3726634
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.7 bits)
S2: 36 (18.6 bits)