GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005093-TA|BGIBMGA005093-PA|undefined
         (707 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   2.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   2.8  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   6.5  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    23   6.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   6.5  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   8.5  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 375 KNTSAMKQPSIIS-FIKEMAEKSAKKKRGRSVSPTKANSLFEETINSHTNMCP 426
           K    +K+ S ++ ++ E+      +KRG+         LF+   N     CP
Sbjct: 511 KTMKTIKKGSFVTQYVGEVITNEEAEKRGKEYDAAGRTYLFDLDYNESEEQCP 563


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 124  NVSKALCTLKRVIASKSKQNNEQRHITVNEQT-ANNEACRKSIENTNTGHPSP 175
            NV+  L T+   +  +S+Q ++Q      +QT   N+A +  ++  N    SP
Sbjct: 958  NVTTNLTTILPPVKVQSQQQSQQSQQQQQQQTIVTNQAGKSILQTANIKQQSP 1010


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 234 ADFEMSDGHNDLNYSPVYSPEHPKSPNQRESGNSDNNCLPTVNSRDP 280
           A+ E   G+N   Y P   P HP+   + E+   +N  +     R P
Sbjct: 92  AESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPP 138


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 415 EETINSHTNMCPSVNIN 431
           E+ I  H NMC S+N++
Sbjct: 19  EKIIGLHNNMCTSLNLS 35


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 4   ERKTRKRKQSVTEERSNTQNVHKS 27
           ER   K K   + +RSNT N  K+
Sbjct: 81  ERSKTKSKSPESRDRSNTSNTSKT 104


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 234 ADFEMSDGHNDLNYSPVYSPEHPKSPNQRESGNSDNNCLPTVNSRDPLNLQEELSFFDDQ 293
           A+ E   G+N   Y P   P HP+   + E      N  P   S+ P      L   + +
Sbjct: 63  AEPEAEPGNNRPVYIPQPRPPHPRLRREAELEAEPGNNRPVYISQ-PRPPHPRLR-REAE 120

Query: 294 PVANSSMIKSIRNPAPSPRDP 314
           P A     + +  P P P  P
Sbjct: 121 PEAEPGNNRPVYIPQPRPPHP 141



 Score = 23.0 bits (47), Expect = 8.5
 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 234 ADFEMSDGHNDLNYSPVYSPEHPKSPNQRESGNSDNNCLPTVNSRDPLNLQEELSFFDDQ 293
           A+ E   G+N   Y P   P HP+   + E      N  P   S+ P      L   + +
Sbjct: 119 AEPEAEPGNNRPVYIPQPRPPHPRLRREAELEAEPGNNRPVYISQ-PRPPHPRLR-REAE 176

Query: 294 PVANSSMIKSIRNPAPSPRDP 314
           P A     + +  P P P  P
Sbjct: 177 PEAEPGNNRPVYIPQPRPPHP 197


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.308    0.124    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,246
Number of Sequences: 429
Number of extensions: 8240
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 12
length of query: 707
length of database: 140,377
effective HSP length: 63
effective length of query: 644
effective length of database: 113,350
effective search space: 72997400
effective search space used: 72997400
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 47 (23.0 bits)