GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005089-TA|BGIBMGA005089-PA|IPR001907|Peptidase S14, ClpP
         (585 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    32   0.015
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      27   0.43 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    27   0.57 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   3.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   3.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   5.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   5.3  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 31.9 bits (69), Expect = 0.015
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 1/126 (0%)

Query: 109 NDLIELNQNLSELI-KKNPKESGVKTHSGSEEDLFSDSSDYSPKSGRKTKHNCLRKNVLS 167
           + L +L Q L  L  +KN   + +   S  E++   D  D   ++    + + +R  ++ 
Sbjct: 130 SSLCDLVQGLERLFDEKNAGNNKITMKSKKEQNAEEDIVDPVEENETYDEFDTIRIPIVR 189

Query: 168 SKFTKPENENVIESDDSMNECLIKASQIVEDIAFDDEVTPPKVNPAKRKYVDVKTNYNSM 227
           S    P N+  IE+D    +  I     ++  A  DE      +  KR  + V   Y+S 
Sbjct: 190 SLSKSPPNDEGIETDSDRRKGSIARCWSLDSTAASDEDISLTTHQQKRHKLRVTRCYSSD 249

Query: 228 DTLLGN 233
             +L +
Sbjct: 250 SAVLSD 255


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 27.1 bits (57), Expect = 0.43
 Identities = 19/70 (27%), Positives = 30/70 (42%)

Query: 162 RKNVLSSKFTKPENENVIESDDSMNECLIKASQIVEDIAFDDEVTPPKVNPAKRKYVDVK 221
           R NV    +    +  VI   D+    L    +++  + F+DEV     N A     D+K
Sbjct: 130 RFNVNEQMYLYALSVAVIHRPDTKLMKLPPMYEVMPHLYFNDEVMQKAYNIAMGDTADMK 189

Query: 222 TNYNSMDTLL 231
             YN++D  L
Sbjct: 190 KTYNNIDYYL 199


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 26.6 bits (56), Expect = 0.57
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 211 NP-AKRKYVDVKTNYNSMDTLLGNVKLGSPIVNKVKKSEMPCIN 253
           NP AKR Y D+ +NYN +   + NV     +  K+K S++  +N
Sbjct: 22  NPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVN 65


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 211 NP-AKRKYVDVKTNYNSMDTLLGNVKLGSPIVNKVKKSEMPCIN 253
           NP AKR Y D+ +NYN +   + N      +  K+K S++  +N
Sbjct: 26  NPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVN 69


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 211 NP-AKRKYVDVKTNYNSMDTLLGNVKLGSPIVNKVKKSEMPCIN 253
           NP AKR Y D+ +NYN +   + N      +  K+K S++  +N
Sbjct: 26  NPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVN 69


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 114 LNQNLSELIKKNPKESGVKTHSGSEEDLFSDSSDYSPKSGRK 155
           +NQ  SELI+  P+ +  K  +G  +   SD+      +G K
Sbjct: 259 VNQKFSELIQSKPQHARRKVLAGIVQTKGSDAELICVTTGTK 300


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 213 AKRKYVDVKTNYNSMDTLLGN 233
           AKR Y D+ +NYN +   +GN
Sbjct: 21  AKRLYDDLLSNYNRLIRPVGN 41


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.130    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,965
Number of Sequences: 429
Number of extensions: 8109
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 8
length of query: 585
length of database: 140,377
effective HSP length: 61
effective length of query: 524
effective length of database: 114,208
effective search space: 59844992
effective search space used: 59844992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)