GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005087-TA|BGIBMGA005087-PA|IPR002114|Phosphotransferase
system, HPr serine phosphorylation site, IPR006652|Kelch repeat,
IPR011043|Galactose oxidase, central
         (454 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   3.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   5.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   7.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   7.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 219 RKLIFTPTVPVWIVKDTKPELISHNMYTFSEDTGLEKWLEVAEKN 263
           R + F   V V ++  T+ E +    Y F  +     W+E +  N
Sbjct: 5   RSIFFLSLVSVVLLDTTQEEKLEWTKYPFGAEANTPGWVEESFTN 49


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 65  MIIAENSSYTKLEQLSAAFGLLNFKQMKKEYIL---NIHRLFWYLSHP 109
           MI+   + +  L  L      +  K   K Y+    NI+ LFW++  P
Sbjct: 1   MIVIMKAGFLFLASLCLLVQAVPNKVADKTYVTRQKNIYELFWHVDQP 48


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)

Query: 87  NFKQMKKEYILNIHRL 102
           N+K++ K YI+NI ++
Sbjct: 112 NYKKLYKNYIINIEQI 127


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)

Query: 87  NFKQMKKEYILNIHRL 102
           N+K++ K YI+NI ++
Sbjct: 112 NYKKLYKNYIINIEQI 127


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,752
Number of Sequences: 429
Number of extensions: 4810
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 454
length of database: 140,377
effective HSP length: 60
effective length of query: 394
effective length of database: 114,637
effective search space: 45166978
effective search space used: 45166978
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)