GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005086-TA|BGIBMGA005086-PA|IPR003000|Silent information
regulator protein Sir2
         (623 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   1.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   4.3  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 77  YGLRLVLDPMIDDYAYTVNNIRGFDVFLFSPGHFADFSGGKVIYRI-VEPDRAEFIELS 134
           Y L L  D    +Y    N++ G   +    G   +     ++  + + P+RAEFIE S
Sbjct: 478 YSLALSPDGQFGNYIIKNNSVGGKKEWTGLIGELVNERADMIVAPLTINPERAEFIEFS 536


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 268 LRNMFRDLDVDDVRMYLALKLGLFSPQDLEPAEPPEKVLDEVSLD 312
           ++    D++ DD++  L+  +    P + E  E  +K LD  S+D
Sbjct: 292 IKKEVEDMEYDDIKTELSTGMNDDIPPETEEEEENDKKLDLDSID 336


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 500 DMLIIMGSSLEVQPFASLIDMVP-----DSCPRLLINREKAGVRPPILRIRGLMCGGLQL 554
           DML++   +LEV+ +  L D VP          LL NR    + P I R  G   GG   
Sbjct: 516 DMLVLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHP 575

Query: 555 DEGSYR 560
            + S R
Sbjct: 576 SDRSAR 581


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.139    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,487
Number of Sequences: 429
Number of extensions: 8939
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 3
length of query: 623
length of database: 140,377
effective HSP length: 62
effective length of query: 561
effective length of database: 113,779
effective search space: 63830019
effective search space used: 63830019
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)