GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005084-TA|BGIBMGA005084-PA|IPR009057|Homeodomain-like,
IPR007738|Homeobox prospero-like
         (175 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/30 (23%), Positives = 16/30 (53%)

Query: 84  SLVELAGAAMALISNGDSFKLFRLIKLRRS 113
           S ++ AG+ +    +GD    + ++  R+S
Sbjct: 379 SFIDAAGSEVKFDEHGDGLARYEILNFRKS 408


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/30 (23%), Positives = 16/30 (53%)

Query: 84  SLVELAGAAMALISNGDSFKLFRLIKLRRS 113
           S ++ AG+ +    +GD    + ++  R+S
Sbjct: 469 SFIDAAGSEVKFDEHGDGLARYEILNFRKS 498


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 57  KHLRKVETKTSSFARELKEVHKP 79
           KHL    TK+     EL ++H P
Sbjct: 381 KHLPTSLTKSKMEVMELSDLHHP 403


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,814
Number of Sequences: 429
Number of extensions: 1822
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 175
length of database: 140,377
effective HSP length: 54
effective length of query: 121
effective length of database: 117,211
effective search space: 14182531
effective search space used: 14182531
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 41 (20.6 bits)