GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005082-TA|BGIBMGA005082-PA|IPR013099|Ion transport 2
         (202 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   4.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   6.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.1  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 2/31 (6%)

Query: 106 GKAFCMAYAMVG--IPLGLVMFQRAAVFSRY 134
           G  FC  YAM+G     G +       F RY
Sbjct: 121 GPLFCQIYAMLGSLFGCGSIWTMTMIAFDRY 151


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 2/31 (6%)

Query: 106 GKAFCMAYAMVG--IPLGLVMFQRAAVFSRY 134
           G  FC  YAM+G     G +       F RY
Sbjct: 87  GPLFCQIYAMLGSLFGCGSIWTMTMIAFDRY 117


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 18  YLLIGAAVFDALESDTESKRLEVLSDMKNGLLRKYNISAEDY 59
           YLL+G+    A +   +   + +L D  N    +Y I+ E Y
Sbjct: 215 YLLVGSLKGIARQFYNDDANVYILPDPYNTKFFRYRITPELY 256


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1
          alpha protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 78 WKFAGAFYFATVVVA 92
          WKF  A Y+ T++ A
Sbjct: 78 WKFETAKYYVTIIDA 92


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 18  YLLIGAAVFDALESDTESKRLEVLSDMKNGLLRK 51
           YL +   +     SD E    EV  + K  LL++
Sbjct: 407 YLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKE 440


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.140    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,594
Number of Sequences: 429
Number of extensions: 1880
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 202
length of database: 140,377
effective HSP length: 55
effective length of query: 147
effective length of database: 116,782
effective search space: 17166954
effective search space used: 17166954
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 42 (21.0 bits)