GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005077-TA|BGIBMGA005077-PA|IPR009053|Prefoldin
         (364 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   4.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   7.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   9.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   9.5  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 143 DGTPNRVNAPSSSQPTSCNGDFLSEAGSLVNALENQ 178
           D + +R+N  + +Q  S NG  LS A + +   EN+
Sbjct: 241 DLSGDRINGFTVAQTISRNGVRLSSARAFITPFENR 276


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 28  KVLKKGVLDEQAKSNELRETLKAKEKALRKGELEIDSLTF 67
           K+  +G+L E  ++N      + KE A R     I+ L+F
Sbjct: 374 KLSSQGILGEDVENNSEVSKSRTKESAWRHFAAIIEWLSF 413


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 305 TLNEKHNTINRLEEELHSTSHNY 327
           TLN K NT+ R   +   TS +Y
Sbjct: 350 TLNTKCNTLERTPSKCSQTSVHY 372


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 232 VTGLLGSLEVPFVLSEE 248
           V G+LGS+ VPF   +E
Sbjct: 370 VCGILGSILVPFFYVQE 386


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 12  KYQKLAAEYSKLRVHIKVLKKGVLDEQAKSNELRETLKAKEK 53
           K +K     S+ +  + V+K   ++++   N  +ET   KE+
Sbjct: 754 KNKKNVGSMSRNKALLPVIKPANVNKEQSPNSTKETTPKKER 795


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.127    0.337 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,690
Number of Sequences: 429
Number of extensions: 3666
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 364
length of database: 140,377
effective HSP length: 59
effective length of query: 305
effective length of database: 115,066
effective search space: 35095130
effective search space used: 35095130
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)