GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005074-TA|BGIBMGA005074-PA|IPR007330|MIT
         (215 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 17   KDGIVSTEIAQEDMSHHVGPGDPLLAKQ 44
            K  + +  I Q+    HV PG  LLA Q
Sbjct: 997  KSILQTANIKQQSPQQHVLPGKTLLASQ 1024


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/22 (27%), Positives = 15/22 (68%)

Query: 45  KHHHRKAFEYISKALKIDEENE 66
           K H +KA E +++A+ + + ++
Sbjct: 693 KEHFKKALELMNRAVSVPQSHQ 714


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 86  ELERGIAVDCWGGRGDAWQRAQKLHDKMKTNLGMAKDR 123
           E+   IAV+   G G       +  D M T + +A DR
Sbjct: 173 EIPHNIAVNASTGMGGPVSLVVQAMDPMNTTVYIADDR 210


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,129
Number of Sequences: 429
Number of extensions: 2443
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 215
length of database: 140,377
effective HSP length: 55
effective length of query: 160
effective length of database: 116,782
effective search space: 18685120
effective search space used: 18685120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)