GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005073-TA|BGIBMGA005073-PA|undefined
         (207 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    28   0.073
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    28   0.073
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.8  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6
          variant 2 precursor protein.
          Length = 94

 Score = 27.9 bits (59), Expect = 0.073
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 29 PNMQIYEKCSPAQKVECPRVTELPLSPTCIKVCS 62
          P+ +I+ +C    +  CP V   PL   CIK+C+
Sbjct: 38 PSNEIFSRCDGRCQRFCPNVVPKPL---CIKICA 68


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6
          variant 1 precursor protein.
          Length = 92

 Score = 27.9 bits (59), Expect = 0.073
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 29 PNMQIYEKCSPAQKVECPRVTELPLSPTCIKVCS 62
          P+ +I+ +C    +  CP V   PL   CIK+C+
Sbjct: 38 PSNEIFSRCDGRCQRFCPNVVPKPL---CIKICA 68


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 118 CIKRWQEYIRSINTRRPPTFDQCGK 142
           C K+ + + R+    +P T D CGK
Sbjct: 215 CSKQLKVHTRTHTGEKPYTCDICGK 239


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,238
Number of Sequences: 429
Number of extensions: 2333
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 207
length of database: 140,377
effective HSP length: 55
effective length of query: 152
effective length of database: 116,782
effective search space: 17750864
effective search space used: 17750864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)