GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005070-TA|BGIBMGA005070-PA|IPR003608|MIR
         (278 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 101 DLVRVTHAPTGRNLHSHRERAPLTAKHLQVTGYGEDGVGDANDVWKIV 148
           D+ RV    + +N+       P T  HL++    E G  D +D   I+
Sbjct: 923 DIDRVLVPGSQQNVAGVFNLRPATTYHLRIVAENEIGASDPSDTVTII 970


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 101 DLVRVTHAPTGRNLHSHR 118
           D V VT A  GR+L +HR
Sbjct: 30  DFVDVTLACDGRSLKAHR 47


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,080
Number of Sequences: 429
Number of extensions: 3546
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 278
length of database: 140,377
effective HSP length: 57
effective length of query: 221
effective length of database: 115,924
effective search space: 25619204
effective search space used: 25619204
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)