GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005063-TA|BGIBMGA005063-PA|IPR006800|Pellino
         (302 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   7.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   7.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   7.7  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 172 NTLVIPRKLSTAHQDLNQPYVYLNC 196
           N +++P  +S  + DL+  ++  NC
Sbjct: 102 NLIILPVAISFFNDDLSTRWIAFNC 126


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 172 NTLVIPRKLSTAHQDLNQPYVYLNC 196
           N +++P  +S  + DL+  ++  NC
Sbjct: 102 NLIILPVAISFFNDDLSTRWIAFNC 126


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 172 NTLVIPRKLSTAHQDLNQPYVYLNC 196
           N +++P  +S  + DL+  ++  NC
Sbjct: 102 NLIILPVAISFFNDDLSTRWIAFNC 126


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,788
Number of Sequences: 429
Number of extensions: 3799
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 302
length of database: 140,377
effective HSP length: 57
effective length of query: 245
effective length of database: 115,924
effective search space: 28401380
effective search space used: 28401380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)