GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005060-TA|BGIBMGA005060-PA|undefined
         (231 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.2  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       21   7.3  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   9.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.6  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 4/84 (4%)

Query: 73  YVPLDRRDDAIRLIVHNASCTASGRTWSEARAPA---PLPSDKPGATPPVDAYAPLGAVV 129
           YVP +  +     I    S T    T  E+  P    PL S   G +  +  +A   AVV
Sbjct: 236 YVPSESGEKVTLGISALLSMTVFLMTIRESLPPTEKTPLISLYYGVSICLVTFASALAVV 295

Query: 130 PVHRKHHRPPLGTRPPPARRTPVL 153
            ++  HHR   GTR P   R+ VL
Sbjct: 296 TLNL-HHRGVRGTRVPGIVRSLVL 318


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 102 ARAPAPLPSDKPGATPPVDAYAPLGAVVPV 131
           A  P P P  +  A    D  A +GAV+ V
Sbjct: 22  APEPEPAPEPEAEADAEADPEAGIGAVLKV 51


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 123 APLGAVVPVHRKHHRPPLGTRPPP 146
           +P+  + P  RK H+P   T P P
Sbjct: 36  SPVITIEPRRRKFHKPITLTIPVP 59


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 202 MKRKQNLFSNFLIGAS 217
           +KRK N+F N ++ AS
Sbjct: 271 IKRKHNVFVNNILAAS 286


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 100 SEARAPAPLPSDKPGATP 117
           ++ RA   +PS KP +TP
Sbjct: 876 AQGRAILKIPSYKPASTP 893


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,887
Number of Sequences: 429
Number of extensions: 3628
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 231
length of database: 140,377
effective HSP length: 56
effective length of query: 175
effective length of database: 116,353
effective search space: 20361775
effective search space used: 20361775
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 42 (21.0 bits)