GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005044-TA|BGIBMGA005044-PA|IPR003347|Transcription
factor jumonji/aspartyl beta-hydroxylase
         (406 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    27   0.29 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   1.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.5  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.5  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   4.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   8.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   8.2  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 27.1 bits (57), Expect = 0.29
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 91  FDYKYVHKWFVSEDELYKDI-SWKDFGFPNKGASDTTLWIGSKGSHTPAHQDTYGVN 146
           +DY Y++   V+E      + SW +  FP     D T++  +  + TP  +  YG N
Sbjct: 75  WDYYYIYHTLVAEQSYGLTLPSWTNNIFPKGELFDATVFTYNITNSTPLLKKLYGGN 131


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 68  CEVKS-MTFKQFIDNL-DTSEEWMYFDYKYVHKWFVSEDELYKDISWKDFGFPNKGASDT 125
           C+ K+  + + F  N+     +W YFDY      F S+++    I   ++ + N    D 
Sbjct: 16  CQAKAHYSLRDFKANIFQVKYQWKYFDYN-----FGSDEKRQAAIQSGEYNYKNNVPIDV 70

Query: 126 TLWIG 130
             W G
Sbjct: 71  DRWNG 75


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 326 IEALIQNECNKLEVPPPITGEQLVDMIRQN 355
           +E  + NE   LEV   IT +Q++D+  +N
Sbjct: 1   LERPVANESEPLEVKFGITLQQIIDVDEKN 30


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 326 IEALIQNECNKLEVPPPITGEQLVDMIRQN 355
           +E  + NE   LEV   IT +Q++D+  +N
Sbjct: 1   LERPVANESEPLEVKFGITLQQIIDVDEKN 30


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 326 IEALIQNECNKLEVPPPITGEQLVDMIRQN 355
           +E  + NE   LEV   IT +Q++D+  +N
Sbjct: 1   LERPVANESEPLEVKFGITLQQIIDVDEKN 30


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 326 IEALIQNECNKLEVPPPITGEQLVDMIRQN 355
           +E  + NE   LEV   IT +Q++D+  +N
Sbjct: 1   LERPVANESEPLEVKFGITLQQIIDVDEKN 30


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 326 IEALIQNECNKLEVPPPITGEQLVDMIRQN 355
           +E  + NE   LEV   IT +Q++D+  +N
Sbjct: 1   LERPVANESEPLEVKFGITLQQIIDVDEKN 30


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 326 IEALIQNECNKLEVPPPITGEQLVDMIRQN 355
           +E  + NE   LEV   IT +Q++D+  +N
Sbjct: 1   LERPVANESEPLEVKFGITLQQIIDVDEKN 30


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 326 IEALIQNECNKLEVPPPITGEQLVDMIRQN 355
           +E  + NE   LEV   IT +Q++D+  +N
Sbjct: 69  LERPVANESEPLEVKFGITLQQIIDVDEKN 98


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 326 IEALIQNECNKLEVPPPITGEQLVDMIRQN 355
           +E  + NE   LEV   IT +Q++D+  +N
Sbjct: 69  LERPVANESEPLEVKFGITLQQIIDVDEKN 98


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 104  DELYKDISWKDFGFPNKGASDT 125
            D  +KD+   DFGF  +   DT
Sbjct: 1405 DAHFKDVKLSDFGFSTEDILDT 1426


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
          protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 81 NLDTSEEWMYFDYKY 95
          +L+   EW YFDY +
Sbjct: 31 SLNVIHEWKYFDYDF 45


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 91  FDYKYVHKWFVSEDELYKDISW 112
           + Y+ V KWF S D   +++ W
Sbjct: 416 YQYQVVGKWFNSLDIRTEELIW 437


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 91  FDYKYVHKWFVSEDELYKDISW 112
           + Y+ V KWF S D   +++ W
Sbjct: 506 YQYQVVGKWFNSLDIRTEELIW 527


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,975
Number of Sequences: 429
Number of extensions: 5121
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 14
length of query: 406
length of database: 140,377
effective HSP length: 59
effective length of query: 347
effective length of database: 115,066
effective search space: 39927902
effective search space used: 39927902
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)