GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005040-TA|BGIBMGA005040-PA|IPR007707|Transforming acidic
coiled-coil-containing
         (321 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    27   0.17 
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    27   0.22 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.67 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   0.67 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   1.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.7  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.2  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 26/145 (17%), Positives = 62/145 (42%), Gaps = 11/145 (7%)

Query: 76  VITRTSDMDPHTVEQLRAVKELLTTQEEEA---QSLRDLNHELRERLEECENKIKKLTEQ 132
           V+T+ + ++ H    +  +K+     ++ A    SLR+  H+ +        + +   ++
Sbjct: 182 VLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRNRTHDFQHTSSRYSRERRCSRDR 241

Query: 133 NEEYAEKEKAL------SQRVAEKVRNNKQMSVVMEEYERTISSLIGEREIEGKRWTEER 186
           N EY +K++         +++ E+  + K+ S   E  +R+  +    R+         R
Sbjct: 242 NREYRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQRSYKNENSYRKYRETSKERSR 301

Query: 187 TTLVRERDEAAAHLASMEHAFNDVH 211
             + RER      ++S+ +  N +H
Sbjct: 302 DRIERERSREPKIISSLSN--NTIH 324


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 7/128 (5%)

Query: 76  VITRTSDMDPHTVEQLRAVKELLTTQEEEA---QSLRDLNHELRERLEECENKIKKLTEQ 132
           V+T+ + ++ H    +  +K+     ++ A    SLR   H  +        +     ++
Sbjct: 171 VLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDR 230

Query: 133 NEEYAEKEKALSQRVAEK---VRNNKQMSVVMEEYERTISSLIGEREIEGKRWT-EERTT 188
           N EY EK++   +   EK   +             ER  +S   ERE    R T +ER+ 
Sbjct: 231 NREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSR 290

Query: 189 LVRERDEA 196
             RER+ +
Sbjct: 291 DRRERERS 298


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 8/118 (6%)

Query: 105 AQSLRDLNHELRERLEECENKIKKLTEQNEEYAEKEKAL------SQRVAEKVRNNKQMS 158
           + SLR   H+ +        +     ++N EY EK++         +++ E+  + K+ S
Sbjct: 214 SNSLRSRTHDFQHTSSRYSRERSCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYS 273

Query: 159 VVMEEYERTISSLIGEREIE--GKRWTEERTTLVRERDEAAAHLASMEHAFNDVHTKY 214
              E  +++  +    R+     K  + +RT   R R+       S +   N+ + KY
Sbjct: 274 CSREREQKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLSNKTIHNNNNYKY 331


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 251 TLRQHAMQQLNKANAELDAVKKTHQAEILKLNAMLKKSEVHAS 293
           TL Q+ +QQL+    E+  +K T   +   LN    KS+V  S
Sbjct: 418 TLPQYTVQQLDFPGIEIADIKLTTNQQRNILNTFWTKSDVDLS 460


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 10/123 (8%)

Query: 76  VITRTSDMDPHTVEQLRAVKELLTTQEEEA---QSLRDLNHELRERLEECENKIKKLTEQ 132
           V+T+ + ++ H    +  +K+     ++ A    SLR   H  +        +     ++
Sbjct: 182 VLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDR 241

Query: 133 NEEYAEKEKALSQRVAEKVRNNKQMSVVMEEYERTISSLIGEREIEGKRWTEERTTLVRE 192
           N EY EK+     R  EK+ N K+  ++ E   R   S   ERE +     E      RE
Sbjct: 242 NREYKEKD-----RRYEKLHNEKE-KLLEERTSRKRYSRSRERE-QNSYKNEREYRKYRE 294

Query: 193 RDE 195
           R +
Sbjct: 295 RSK 297


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 9/104 (8%)

Query: 76  VITRTSDMDPHTVEQLRAVKELLTTQEEEA---QSLRDLNHELRERLEECENKIKKLTEQ 132
           V+T+ + ++ H    +  +K+     ++ A    SLR   H  +        +     ++
Sbjct: 182 VLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSHYSRERSCSRDR 241

Query: 133 NEEYAEKEKALSQRVAEKVRNNKQMSVVMEEYERTISSLIGERE 176
           N EY EK+     R  EK+ N K+  ++ E   R   S   ERE
Sbjct: 242 NREYKEKD-----RRYEKLHNEKE-KLLEERTSRKRYSRSRERE 279


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 228  EETLKHTVEENNDAIQKLEARYETLRQHAMQQLNKANAELDAVKKTHQAEILKLNAMLKK 287
            +  +K + E   +A  + E  Y T+ + A+QQ        D + +T  AE +   A  + 
Sbjct: 1645 QRPMKESQENQQNAETQRERYYATIHKVALQQAANTGGGPDKIPET--AEDISPYATFQL 1702

Query: 288  SEVHASSL 295
            SE    SL
Sbjct: 1703 SEGGGGSL 1710


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 228  EETLKHTVEENNDAIQKLEARYETLRQHAMQQLNKANAELDAVKKTHQAEILKLNAMLKK 287
            +  +K + E   +A  + E  Y T+ + A+QQ        D + +T  AE +   A  + 
Sbjct: 1641 QRPMKESQENQQNAETQRERYYATIHKVALQQAANTGGGPDKIPET--AEDISPYATFQL 1698

Query: 288  SEVHASSL 295
            SE    SL
Sbjct: 1699 SEGGGGSL 1706


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 19  QTSSGSTEK--PTQVVTPAVNRSQPSAKVTPVKASTVSPAIAT 59
           ++ +GST+   P  V T     + P+A  T    +T S  +AT
Sbjct: 205 ESKAGSTDASTPATVTTTGATTTLPAASATGTGPATPSAVVAT 247


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 71  PPPPPVITRTSDMDPHTVE 89
           P  PP   R  D+D HT++
Sbjct: 976 PSGPPTSIRVDDLDQHTLK 994


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 105 AQSLRDLNHELRERLEECENKIKKLTEQNEEYAEKEKALSQRVAEKVRNNKQMSVVMEEY 164
           + SLR+  H  +        +     ++N EY EK+     R  EK+ N K+  ++ E  
Sbjct: 214 SNSLRNRTHGFQHTSSRYSRERSCSRDRNREYREKD-----RRYEKLHNEKE-KLLEERT 267

Query: 165 ERTISSLIGERE 176
            R   S   ERE
Sbjct: 268 SRKRYSRSRERE 279


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 9/58 (15%)

Query: 17  VTQTSSGSTEKPTQVVTPAVNRSQPSAKVTPVKASTVSPAIATIDRLLSLGANIPPPP 74
           V++TS+   + PT V T   + S        +  STV    A ++    L  +IPPPP
Sbjct: 720 VSRTSTAG-QFPTNVATTVTSMS--------IDQSTVIQTGANVNLWQPLSVSIPPPP 768


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 24  STEKPTQVVTPAVNRSQPSAKVTPVKASTVSPAIATIDRLLSLGANIPPPPPV 76
           S + P  + T  V+ +   A V   +    SP++        L   +PPPPP+
Sbjct: 332 SRQFPRDLTTQTVSTT---ADVLQEEEEEYSPSVQHEFVTFDLDEPLPPPPPI 381


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 5    EQNIVNSMQQLSVTQTSSGSTEKPTQVVTP 34
            +Q IV +    S+ QT++   + P Q V P
Sbjct: 987  QQTIVTNQAGKSILQTANIKQQSPQQHVLP 1016


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 72  PPPPVITRTSDMDPHTVEQ 90
           PPPP++ R +  D  T+ +
Sbjct: 338 PPPPLVWRRNGADLETLNE 356


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.122    0.318 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,533
Number of Sequences: 429
Number of extensions: 4251
Number of successful extensions: 20
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 15
length of query: 321
length of database: 140,377
effective HSP length: 58
effective length of query: 263
effective length of database: 115,495
effective search space: 30375185
effective search space used: 30375185
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 44 (21.8 bits)