GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005036-TA|BGIBMGA005036-PA|IPR005834|Haloacid
dehalogenase-like hydrolase, IPR006439|HAD-superfamily hydrolase,
subfamily IA, variant 1
         (218 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   2.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   6.8  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   6.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.0  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 133 DQHIFHEACKLLNVEPRNCIMVGDKLETDIKGGKEAELAATVWIP 177
           D H  H ACK  +++ +     G   E + K  K  + A  + +P
Sbjct: 362 DCHTAHIACKFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVP 406


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 133 DQHIFHEACKLLNVEPRNCIMVGDKLETDIKGGKEAELAATVWIP 177
           D H  H ACK   ++ +     G   E + K  K  + A  +  P
Sbjct: 362 DCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQP 406


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 133 DQHIFHEACKLLNVEPRNCIMVGDKLETDIKGGKEAELAATVWIP 177
           D H  H ACK   ++ +     G   E + K  K  + A  +  P
Sbjct: 73  DCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQP 117


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 107 QKIERLGLRKYFDCVLVSGDLPWEKPDQHI 136
           ++ E+L ++   DC       P E+PD  +
Sbjct: 310 ERFEQLRIKILGDCYYCISGAPIERPDHAV 339


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 101 PSRAQWQKIERLGL 114
           PS   WQ+  RLG+
Sbjct: 440 PSTTLWQRAHRLGI 453


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,969
Number of Sequences: 429
Number of extensions: 2848
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 218
length of database: 140,377
effective HSP length: 55
effective length of query: 163
effective length of database: 116,782
effective search space: 19035466
effective search space used: 19035466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)