GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005034-TA|BGIBMGA005034-PA|IPR008262|Lipase, active site
         (253 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 8/77 (10%)

Query: 101 SHRRKLHLIGHSSGSWLLVELLDRNKQLTKRTVSVNLLFPTLQKIAETHRILYMYLNPDI 160
           S R K +  G  +G ++++E        T+ +  +N     L+ +   HRIL    NPDI
Sbjct: 369 SFRSKPYRFGIQNGDYVVLE--------TEWSSFINPWTKKLEFVVGQHRILKGPANPDI 420

Query: 161 EKYSLVLAYEIIDSSSE 177
            + S    +  + + SE
Sbjct: 421 FRVSCATEHSQLTNISE 437


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 8/77 (10%)

Query: 101 SHRRKLHLIGHSSGSWLLVELLDRNKQLTKRTVSVNLLFPTLQKIAETHRILYMYLNPDI 160
           S R K +  G  +G ++++E        T+ +  +N     L+ +   HRIL    NPDI
Sbjct: 75  SFRSKPYRFGIQNGDYVVLE--------TEWSSFINPWTKKLEFVVGQHRILKGPANPDI 126

Query: 161 EKYSLVLAYEIIDSSSE 177
            + S    +  + + SE
Sbjct: 127 FRVSCATEHSQLTNISE 143


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,848
Number of Sequences: 429
Number of extensions: 2728
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 253
length of database: 140,377
effective HSP length: 56
effective length of query: 197
effective length of database: 116,353
effective search space: 22921541
effective search space used: 22921541
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)