GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005030-TA|BGIBMGA005030-PA|undefined
         (279 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   1.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.3  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 220 GTVKNGTLPMSDEWSAGERAQYASSPKTSLSSKPA 254
           GT+K G L +S   SA  R+ +  S    L +KP+
Sbjct: 344 GTLKKGCLLVSGIASAKVRSMFNDSGNPILKAKPS 378


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 3   VIITKNKARPSPPKNCTVTSSNNSTWLEDSKEETEDF 39
           +I+T  K   S  ++  V   N+  WL +   E EDF
Sbjct: 269 LILTLGKKEFSHYEHQNVFVKNSGQWLREYDRELEDF 305


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 144 AIIVTSVITASALILIVYFLRRKRERPTMKQSSE 177
           AI+   V+    +I+ V  LRR  +    KQ S+
Sbjct: 537 AIVAVVVLLVIIIIMTVLILRRASDECNKKQPSD 570


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 234 SAGERAQYASSPKTSLSSKPAASG 257
           S     + AS+P +S SS P A G
Sbjct: 510 SPSPNPRIASAPSSSTSSSPPAKG 533


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 5   ITKNKARPSPPKNCTVTSS 23
           + K+K+   PPKNC  + S
Sbjct: 305 MNKSKSITEPPKNCADSGS 323


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.128    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,766
Number of Sequences: 429
Number of extensions: 3509
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 279
length of database: 140,377
effective HSP length: 57
effective length of query: 222
effective length of database: 115,924
effective search space: 25735128
effective search space used: 25735128
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)