GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005019-TA|BGIBMGA005019-PA|IPR006621|Nose resistant to
fluoxetine-4, N-terminal
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    32   0.14 
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    29   1.8  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    28   2.3  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    27   5.4  
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom...    27   5.4  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    26   9.4  

>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 86  HHMIQGLRNFTLWAVWEWDSQSTEPLG-VLFGNKYQLGNYDQCMNPPWSDSRT--DLLMK 142
           H  IQG+ N   +A+   +     P G V+ G +Y  G  +   N    D +   ++L++
Sbjct: 215 HRQIQGIINCMPFAIVGSEDDIRTPDGRVVKGREYPWGIVE-IENEEHCDFKQLRNILIR 273

Query: 143 YCLVDIILETEQKSYE 158
            C++D+I  TE+K YE
Sbjct: 274 SCMLDLIQTTEEKLYE 289


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 218 VTQVIKAFCMKENASNLFKMRRDGLEAIYGVKWLTMCLIAVDHLISIVNSGPIS 271
           VT V  A C+K  +  LF +RR+ +  I+ + WL +C I    L   V SG ++
Sbjct: 211 VTAVFLAQCVKVISIGLFNIRREMMIIIW-LLWLIICCI----LFGCVKSGDLN 259


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 218 VTQVIKAFCMKENASNLFKMRRDGLEAIYGVKWLTMCLIAVDHLISIVNSGPIS 271
           VT V  A C+K  +  LF +RR+ +  I+ + WL +C I    L   V SG ++
Sbjct: 178 VTVVFLAQCVKVISIGLFNIRREMMIIIW-LLWLIICCI----LFGCVKSGDLN 226


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 218 VTQVIKAFCMKENASNLFKMRRDGLEAIYGVKWLTMCLI 256
           VT +  A C+K  +  LF +RR+ +  I+ + WL +C I
Sbjct: 140 VTVISLAKCVKVISIGLFNIRREMMIIIW-ILWLIICCI 177


>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)

Query: 335 AVVIFYVCAVHTYTGNGPLWN 355
           A+V+FY C + T+ G G LWN
Sbjct: 7   AIVLFYCCML-TFAGIGFLWN 26


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 406 WFSIYKKYPKAGLIAASVMFMIALSLPGII 435
           W S  + YP++ L+  S +F   + + GII
Sbjct: 162 WLSATRYYPQSSLLRVSFIFKFVIIVVGII 191


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.139    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,019,257
Number of Sequences: 5004
Number of extensions: 82747
Number of successful extensions: 245
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 6
length of query: 450
length of database: 2,362,478
effective HSP length: 75
effective length of query: 375
effective length of database: 1,987,178
effective search space: 745191750
effective search space used: 745191750
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)