GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005018-TA|BGIBMGA005018-PA|undefined
         (130 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    26   1.6  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    25   2.9  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    24   6.6  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    24   6.6  

>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 77  QPLES--AIYAAFNRPVWAFGVGLLVMCC 103
           +P+ES  + +A     VWA G+ L+ +CC
Sbjct: 206 EPIESQSSSFATAPNDVWALGIILINLCC 234


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 6   NEDFHLLYIKSHA-------RFASY--LVGVFGGFIFVKYKAEGKLSTISKKWSAFGTI 55
           N  F LL I SH        R + Y  ++G   GF ++   A+GK + ++ + +  G +
Sbjct: 139 NNPFALLLISSHEKMNYVHRRLSQYAIMIGAIHGFAYIGLAAQGKRALLTARVTIIGYV 197


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.2 bits (50), Expect = 6.6
 Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 91  VWAFGVGLLVMCCSFGQLPDVLESLLFVWSKMTEG 125
           VW+FG+ L V+ C  G++P   +++  + +K+ +G
Sbjct: 324 VWSFGIVLYVLVC--GKVPFDDQNMSALHAKIKKG 356


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 24.2 bits (50), Expect = 6.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 86  AFNRPVWAFGVGLLVMCCSFGQLPDVLESLLFVWSKMTEGIM 127
           AF    +    G  ++  + G+L D LE  LFV S+ T  +M
Sbjct: 364 AFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVM 405


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.142    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,792
Number of Sequences: 5004
Number of extensions: 17647
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 4
length of query: 130
length of database: 2,362,478
effective HSP length: 66
effective length of query: 64
effective length of database: 2,032,214
effective search space: 130061696
effective search space used: 130061696
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 49 (23.8 bits)