GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005017-TA|BGIBMGA005017-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site
         (243 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    27   1.9  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    27   2.5  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   4.3  

>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 149 PDNGHKQKLNKPFSPYQSAIDFIEYHPPHTRPLNELTW 186
           P +G    LN P  P+  +   I Y P  T P   +TW
Sbjct: 275 PSSGVSSVLNTPTRPHALSTPRIRYGPQPTDPQFGITW 312


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 98  VWDTQTSEPQGQLFANKYQLGNFDQCMNAPWTDSHD 133
           VW T T EP      +     NF   +  P  +SHD
Sbjct: 42  VWTTHTGEPVASSVLSTSGSNNFSSPLKRPAPESHD 77


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 191 PVSCLPSTIEKLMAVTLARSHLGAAGLKARI 221
           PV C+   + +L+   LA SH G A L+ ++
Sbjct: 898 PVECIKPLLPELIPNLLAWSHEGKANLRVKV 928


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,148,817
Number of Sequences: 5004
Number of extensions: 46927
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 3
length of query: 243
length of database: 2,362,478
effective HSP length: 71
effective length of query: 172
effective length of database: 2,007,194
effective search space: 345237368
effective search space used: 345237368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)