GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005017-TA|BGIBMGA005017-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site
         (243 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130606-1|AAI30607.1|  104|Homo sapiens chromosome 21 open read...    31   3.7  
BC130602-1|AAI30603.1|  104|Homo sapiens chromosome 21 open read...    31   3.7  

>BC130606-1|AAI30607.1|  104|Homo sapiens chromosome 21 open reading
           frame 34 protein.
          Length = 104

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 80  QINRMVRGLQNFTLWAVWVWDT--QTSEPQGQLFANKY--QLGNFDQCMNAPWTDSHDDL 135
           QI+++V G   + LWA   W T  +T   QGQ  A+ Y  QL  F       W +  + L
Sbjct: 25  QISQLVEGASGWQLWAFGCWTTIGKTEMEQGQKIAHFYSTQLLLFHDLQEFYWDNYPNKL 84

Query: 136 HMKY 139
              Y
Sbjct: 85  QAFY 88


>BC130602-1|AAI30603.1|  104|Homo sapiens chromosome 21 open reading
           frame 34 protein.
          Length = 104

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 80  QINRMVRGLQNFTLWAVWVWDT--QTSEPQGQLFANKY--QLGNFDQCMNAPWTDSHDDL 135
           QI+++V G   + LWA   W T  +T   QGQ  A+ Y  QL  F       W +  + L
Sbjct: 25  QISQLVEGASGWQLWAFGCWTTIGKTEMEQGQKIAHFYSTQLLLFHDLQEFYWDNYPNKL 84

Query: 136 HMKY 139
              Y
Sbjct: 85  QAFY 88


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.134    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,333,506
Number of Sequences: 224733
Number of extensions: 1482892
Number of successful extensions: 2484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2484
Number of HSP's gapped (non-prelim): 2
length of query: 243
length of database: 73,234,838
effective HSP length: 88
effective length of query: 155
effective length of database: 53,458,334
effective search space: 8286041770
effective search space used: 8286041770
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)