GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005015-TA|BGIBMGA005015-PA|IPR000960|Flavin-containing
monooxygenase FMO, IPR013027|FAD-dependent pyridine
nucleotide-disulphide oxidoreductase, IPR001100|Pyridine
nucleotide-disulphide oxidoreductase, class I, IPR001327|Pyridine
nucleotide-disulphide oxidoreductase, NAD-binding region
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...   120   3e-28
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    30   0.73 
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    29   1.3  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    29   1.7  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    29   1.7  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    28   3.0  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    28   3.0  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    27   3.9  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    27   5.2  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    27   5.2  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    27   6.8  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    27   6.8  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   6.8  
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p...    27   6.8  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   6.8  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    26   9.0  

>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score =  120 bits (290), Expect = 3e-28
 Identities = 102/375 (27%), Positives = 175/375 (46%), Gaps = 40/375 (10%)

Query: 3   MCDMFPKTSRACIIGAGYSGLGAARYM--KQYHVNFTVFEATRNFGGTWHF--------- 51
           MC   P   +  IIGAG SGL  A+ +  ++     T+FE   + GG W++         
Sbjct: 1   MC--LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLP 58

Query: 52  ----DPHVGTDE----DGLPVFSS-MYNDLRTNTPRQTMEYYDFPFPEGTPSYPSATCFL 102
               +P + T+       LPV+ S +Y DL+TNTP + M Y D  F   T  +P      
Sbjct: 59  VPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQ 118

Query: 103 DYLKSFVKHFDLLSHIQLRSLVTSVKWAGNHWNLTYTKTDTKENVT-ETCDFIVVANGPY 161
           +Y + + +   LL  I+L + V  ++     W +TY  T     ++ +  D + + NG Y
Sbjct: 119 EYQRIYAQ--PLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHY 176

Query: 162 NTPVWPKYDGIDTF----EGSMIHSHDYKDRKAYKNRKVLIVGAGASGLDLAIQLSNVTA 217
             P  P   G+D +     GS++HS  +++ + +    VL+VG  +S  DL   L+ V  
Sbjct: 177 EVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAK 236

Query: 218 KLVHSHHLVYNEPKFFDGYVKKPDIMAFTP--KGVIFR-DESFEELDDVIFCTGYDFNHP 274
             ++   L   + +  +   + P+I  F P  + +  +  +    +D VI+CTGY ++ P
Sbjct: 237 HPIYQSLLGGGDIQ-NESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVP 295

Query: 275 F------LDESCGVTSTAKFVLPLHKQLVNIKHPSMVFLGIAKKIIT-RVMDAQAEYAAL 327
           F            +      V  +++ +  I  P++ F+G+A  ++      AQA + A 
Sbjct: 296 FPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLAR 355

Query: 328 LASGKLKLPSQEEML 342
           + SG+LKLPS+EE L
Sbjct: 356 VWSGRLKLPSKEEQL 370


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 177 GSMIHSHDYKDRKAYKNRKVLIVGAGASGLDLA--IQLSNVTAKLV 220
           GS + S+D     ++K+ K++IVGAG  G   A  + LS + A++V
Sbjct: 4   GSKVFSNDSVRSSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIV 49


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 148 TETCDFIVVANGPYNTPVWPKYDGIDTFEGSMIHSHDYKDRKAYK-NRKVLIVGAGASGL 206
           T +C+ I+   G     V+ +Y  +   +G   +  D + RK       V +   G +  
Sbjct: 34  TTSCN-IIKKEGANIISVYARYPVVAA-KGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHP 91

Query: 207 DLAIQLSNVTAKLVHSHHLVYNEP 230
           ++A   ++  +KLVHS +L YNEP
Sbjct: 92  EVARLAADQCSKLVHSSNLFYNEP 115


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 188 RKAYKNRKVLIVGAGASGLDLAIQLSNVTAK 218
           R A  + KVL+VG G++G+ +A Q+ N  +K
Sbjct: 23  RFASTHHKVLVVGGGSAGISVAHQIYNKFSK 53


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 334 KLPSQEEMLNSWLKHISSLQVKGMKIIDLNVVGSEMDQ 371
           KLPS+EE    WL    +  V  +  I+ +  G+E D+
Sbjct: 395 KLPSEEENTTKWLNKAINDLVSSLSKINFSTEGTEFDK 432


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 464

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 15 IIGAGYSGLGAARYMKQYHVNFTVFEATRNFGGT 48
          +IG G  GL +AR   ++     + EA+   GGT
Sbjct: 12 VIGGGSGGLASARRAAKHGAKVALIEASGRLGGT 45


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 121 RSLVTSVKWAGNHWNLTYTKTDTKENVTETCDFIVVANGPYNTPVWPKYDGIDTF 175
           R LV   +   N W+ ++  +  +EN  +    + +A G  +T V P+Y  I TF
Sbjct: 303 RHLVEFYESIKNFWSQSFLLSP-EENSLDDVLLVSIAGGGLDTHVVPEYSSISTF 356


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 191 YKNRKVLIVGAGASGLDLAIQLSNVTAKLVH 221
           +K+ KVL+VGAG  G +L   L     K VH
Sbjct: 23  FKSAKVLLVGAGGIGCELLKNLLMSGVKEVH 53


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 198 IVGAGASGLDLAIQLSNVTAKLVHSHHLVYNEPKFFDGYVKKPDIMAFTPKGVIFRDESF 257
           ++G   + L  +  L+N++ K+           K FD   +   I AFTP G + +D   
Sbjct: 359 LIGCFFAVLIASYSLANISPKMQSFVSCASAAKKIFDTIDRVSPINAFTPTGDVVKDIKG 418

Query: 258 E-ELDDVIF 265
           E EL ++ F
Sbjct: 419 EIELKNIRF 427


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 99  TCFLDYLKSFVKHFDLLSHIQLRSLVTSVKWAGNHWNLTYTKTDTKEN 146
           T   D +  FV+H+      +L +L+   KW  N  N T  +T  ++N
Sbjct: 606 TIIADEVVKFVEHYSSTFDQELLNLINDEKWQ-NFVNKTLVETRNRDN 652


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 360 IDLNVVGSEMDQYFGNLTEEAGVVRAPPVLTAIRDFNGVNRLDDLLNYREYDYSIIDNFH 419
           I L    S   +Y  NL E     R   ++T    + G+    DL+  RE+ Y ++D  H
Sbjct: 389 IKLRGASSSFHRYAKNLVESV-FTRGHILITT---YAGLRIYGDLILPREWGYCVLDEGH 444

Query: 420 YERKYNPRQNIPC 432
             R  +   +I C
Sbjct: 445 KIRNPDSEISISC 457


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 293 HKQLVNIKHPSMVFLGIAKKIITRVMDAQAEYAALLASGKLKLPSQEEMLNSWLKHIS 350
           H  ++NIKHP    LG   K     +  + E    L   KL     +  +N W KH+S
Sbjct: 65  HSVILNIKHPE---LGEPLKPYQTPLPPELEAPLQLLISKL----TQHYINGWYKHVS 115


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)

Query: 146 NVTETCDFIV--VANGPYNTPVWPKYDGIDTFEG-----SMIHSHDYKDRKA 190
           N  E  +F+V  VAN   N P +PK+  ID + G      +  S+D KD ++
Sbjct: 519 NNKEWVNFLVRDVANPSSNDPYFPKHRMIDIYHGHGWASGLFESNDGKDEES 570


>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 325 AALLASGKLKLPSQEEMLNSW-LKHISSLQVKGMKIIDLNVVGSEMDQYFGNLTEEAGVV 383
           AA+ A+  +++  Q      W  K IS   V+G++ I   +   E +  +G+L  E GV 
Sbjct: 157 AAIFANELVEMYFQYANFKGWNCKFISKSAVQGLEAITEAIFSIEGEGAYGHLMLEGGVH 216

Query: 384 R 384
           R
Sbjct: 217 R 217


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 189 KAYKNRKVLIVGAGASGLDLAIQLSNVTAK 218
           ++   + V I+GAG +G+  A QL+N+ A+
Sbjct: 253 ESLSQKTVAIIGAGMAGISCARQLTNLFAQ 282


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 2/104 (1%)

Query: 135 NLTYTKTDTKENVTETCDFIVVANGPYNTPVWPKYDGIDTFEGSMIHSHDYKDRKAYKNR 194
           N TY +  T   ++ T   +      +N  V  +    +T  GS I     + R  ++  
Sbjct: 440 NTTYRREGTSGQLSPTSSIMGGNPSLFNGSVLSRNSVNET--GSAIVDVIKQQRDRFRRA 497

Query: 195 KVLIVGAGASGLDLAIQLSNVTAKLVHSHHLVYNEPKFFDGYVK 238
            V +V   ++  D    L +   ++  S+ L+Y + +F D Y K
Sbjct: 498 NVTLVNQVSAANDKIALLESKLEEVEKSNTLLYEQMRFRDHYQK 541


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,947
Number of Sequences: 5004
Number of extensions: 102460
Number of successful extensions: 248
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 18
length of query: 436
length of database: 2,362,478
effective HSP length: 75
effective length of query: 361
effective length of database: 1,987,178
effective search space: 717371258
effective search space used: 717371258
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)