GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005015-TA|BGIBMGA005015-PA|IPR000960|Flavin-containing
monooxygenase FMO, IPR013027|FAD-dependent pyridine
nucleotide-disulphide oxidoreductase, IPR001100|Pyridine
nucleotide-disulphide oxidoreductase, class I, IPR001327|Pyridine
nucleotide-disulphide oxidoreductase, NAD-binding region
         (436 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   2.2  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    24   2.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   5.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.8  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 356 GMKIIDLNVVGSEMDQYFGNLTE 378
           G K IDL ++G++ +  FG+  E
Sbjct: 91  GQKTIDLELIGTQAEGIFGSSEE 113


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 356 GMKIIDLNVVGSEMDQYFGNLTE 378
           G K IDL ++G++ +  FG+  E
Sbjct: 59  GQKTIDLELIGTQAEGIFGSSEE 81


>AF023666-1|AAC14552.1|  363|Apis mellifera
          sn-glycerol-3-phosphate dehydrogenase protein.
          Length = 363

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 12 RACIIGAGYSGLGAARYMKQYHVNFTVFE 40
          R CI+G+G  G   A+ +     NF+ FE
Sbjct: 6  RICIVGSGNWGSTIAKIIGINAANFSNFE 34


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 43  RNFGGTWHFDPH 54
           +N+GG +H D H
Sbjct: 268 KNYGGVYHLDNH 279


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,714
Number of Sequences: 429
Number of extensions: 6851
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 4
length of query: 436
length of database: 140,377
effective HSP length: 60
effective length of query: 376
effective length of database: 114,637
effective search space: 43103512
effective search space used: 43103512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)