GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005014-TA|BGIBMGA005014-PA|undefined
         (2053 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    31   1.3  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    31   1.7  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    29   6.8  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    29   6.8  

>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 4/37 (10%)

Query: 907 EWG-HGCKLKDLSFKWHVPCKEEAECAQMLLDRYMKP 942
           EWG +G +LKD S ++H    ++ E A+ +L R +KP
Sbjct: 69  EWGEYGMRLKDRSIRFHA---KQLETAEQILKRILKP 102


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 19/82 (23%), Positives = 38/82 (46%)

Query: 693 IEDFVLVFFEKIFSIVESSVLEHVRLDTKESDGMRSKADAVMEAALSSATTAVLMQCSPK 752
           I   + V  + I+++ E  +++ +   +  SDG   K  A+++A +      +LM  S +
Sbjct: 246 ISQVIPVLSKLIYTLDEDVLVDALWAISYLSDGANEKIQAIIDAGIPRRLVELLMHPSAQ 305

Query: 753 IFKEALRKFKSFATQTTFETNV 774
           +   ALR   +  T    +T V
Sbjct: 306 VQTPALRSVGNIVTGDDVQTQV 327


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
            subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 2/37 (5%)

Query: 1167 KLAELLIKGGEGDEWHARHKGTLYMMLGPRNAPLIAK 1203
            ++A ++IKG +GD+++ R +  +Y++    N P+ AK
Sbjct: 904  RVAYVIIKGAQGDQFYMRSEDPIYVL--ENNIPIDAK 938


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 1266 EQLNDAEFVEMLKKAKQNETAFSDRNERLYNELILELVDLAET 1308
            +Q+N+    E+L+K  + ET  S++NE L  +L LE  DL +T
Sbjct: 914  KQINNELESELLEKTSKVETLLSEQNE-LKEKLSLEEKDLLDT 955


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,688,382
Number of Sequences: 5004
Number of extensions: 357662
Number of successful extensions: 828
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 827
Number of HSP's gapped (non-prelim): 4
length of query: 2053
length of database: 2,362,478
effective HSP length: 84
effective length of query: 1969
effective length of database: 1,942,142
effective search space: 3824077598
effective search space used: 3824077598
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)