GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005014-TA|BGIBMGA005014-PA|undefined
         (2053 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0068 + 11107493-11107653,11109116-11109218,11109311-111094...    95   7e-19
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395...    31   9.8  
06_01_0196 + 1520015-1520191,1520483-1520527,1521851-1521910,152...    31   9.8  

>06_02_0068 +
           11107493-11107653,11109116-11109218,11109311-11109423,
           11109502-11109624,11110165-11110266,11110367-11110532,
           11111215-11111331,11111438-11111478,11111735-11111836,
           11111924-11112140,11112271-11112498,11112580-11112707,
           11112804-11112921,11113020-11113235,11113314-11113463,
           11113553-11113629,11113973-11114190,11114443-11114656,
           11114744-11114823,11114898-11115015,11115092-11115262,
           11116124-11116292,11116404-11116447,11116620-11116662,
           11116743-11116888,11118337-11118431,11118579-11119477,
           11120540-11120638,11120907-11121002,11123447-11123568,
           11123675-11123767,11123922-11124114
          Length = 1653

 Score = 94.7 bits (225), Expect = 7e-19
 Identities = 89/356 (25%), Positives = 166/356 (46%), Gaps = 39/356 (10%)

Query: 326 ALVKCARPYFELSATKEILDLLLPRI-NPWTADSYV-LSQLVVFLPVALHPRNSALGHEL 383
           +LV+ +R  F   A  EI     P + NPW   ++  +  L +FLP   + RN       
Sbjct: 145 SLVRASRSLFPEGAAAEIWSEFSPLLKNPWHNSAFEGIGFLRLFLPA--NSRNQDHFTTD 202

Query: 384 WFEKLMVLWDTCYNAQCGVWDLM-IIFTGLAKRNPGVINWSQYAPRIFSRFLHALNLPVS 442
           W  + + +W +  N  C  WD+          +    ++W ++ P +F+R+L+   +P+S
Sbjct: 203 WIAECLDIWGSVTN--CNFWDIQWAAIVARCIKGSISVDWEKFIPLLFTRYLNMFEVPIS 260

Query: 443 -----YK---DMQINNHYTLDTKHM--ASWIVWSICPDGV-VLKHLRCFMGGVESYLHSA 491
                Y    ++  N  +   +K    +  I  SIC   + VLK+++        + H +
Sbjct: 261 SGSGSYPFPLNVPRNTRFLFSSKTRTPSKAIAKSICKTHIFVLKNIKF------RFYHPS 314

Query: 492 NSGRWSYKLRDFLKKLTKEFLNRYRRETEHKFKESWENQVPEHYKLREEDITEFINIVLE 551
           N GRW+Y L  FL+ L   F     R  +H+  E+ +++    + L +E+   F+ +VL+
Sbjct: 315 NGGRWTYSLERFLRYLVLYF----ERRLQHEQFEALDDK-HNQFCLGKEERCGFVKVVLK 369

Query: 552 PTLQALYNRVDSL--EVSFALQNLATLRPAIVIPPLLEKFKTSLNSLTEPHRVTAAMSGL 609
              +  Y++ DSL   VS A   L+ + P++V+P +   F+ +L + T  H++  A++ +
Sbjct: 370 FLDRGQYSKDDSLADTVSIATSILSYVEPSLVLPFVATNFQLALETTTATHQLKNAVTSV 429

Query: 610 AAVARPMV-------RGPDAGYSEGPTH-IVHILMAVLPGLDPNDIKKTLVSLHFI 657
           A   R ++       +  D+  ++     IV  L   L G+D ND  KT+ ++  I
Sbjct: 430 AFSGRALILSSLCSSQSDDSSTADTLNDLIVTSLSNALLGMDANDPPKTIATMQLI 485



 Score = 62.5 bits (145), Expect = 3e-09
 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 12/125 (9%)

Query: 1928 LEVRQSAAKLLTGLM-----------HCRALPDEQRTLRLLIRSARSKQLVER-HFGVLG 1975
            L+VR+ AA +L  LM             R+    QR L    R A+S   V   H  VL 
Sbjct: 1517 LQVREHAAGVLASLMKGIDKDLSKDFRDRSYAQAQRILHTRQRGAKSGHSVATIHGAVLA 1576

Query: 1976 MCAYLSSRPYSIGSKFGDVLSELSRHTNAPDPVPATIRRALADFRRTHQDDWPKHRDQLS 2035
            + A + S PY + S     ++ L+R    P P+ +T+ +A+A+F+RTH D W   ++  +
Sbjct: 1577 LTASVLSVPYDMPSWLPSHVTLLARFIREPSPIKSTVTKAVAEFKRTHADTWSIQKEAFT 1636

Query: 2036 EDELD 2040
            EDEL+
Sbjct: 1637 EDELE 1641


>10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,
            3959482-3960445,3960588-3960648,3961500-3961946
          Length = 1024

 Score = 31.1 bits (67), Expect = 9.8
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 2011 TIRRALADFRRTHQDDWPKHRD 2032
            T+R  LAD R+ HQDD  K+RD
Sbjct: 828  TLRTELADERQNHQDDLAKYRD 849


>06_01_0196 + 1520015-1520191,1520483-1520527,1521851-1521910,
            1522246-1522358,1522432-1522642,1523087-1523133,
            1523211-1523369,1523521-1523624,1524300-1524634
          Length = 416

 Score = 31.1 bits (67), Expect = 9.8
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 1071 YGALDRV--LDGRAGPTNRFGGAGTSRLRMLTAEAARIHDESRVNLVCEAGITPIALKAL 1128
            YG + RV  L GR        G     +R+L A+AA   D   VN     G+T + L AL
Sbjct: 92   YGQVWRVENLSGRTALHMAAAGGHVKCVRLLVADAAGDRD-GYVNKAANGGVTALHLAAL 150

Query: 1129 HALAE 1133
            H   E
Sbjct: 151  HGHVE 155


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,857,452
Number of Sequences: 37544
Number of extensions: 2290648
Number of successful extensions: 4891
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4881
Number of HSP's gapped (non-prelim): 9
length of query: 2053
length of database: 14,793,348
effective HSP length: 93
effective length of query: 1960
effective length of database: 11,301,756
effective search space: 22151441760
effective search space used: 22151441760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 67 (31.1 bits)