GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005014-TA|BGIBMGA005014-PA|undefined
         (2053 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   6.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   6.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    25   8.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 941  KPEISKLKQWVNGDCEMSREERCRCFYVLVAVLSCGNFLPQPNEEPVLLLETQVPSTSIP 1000
            +P IS  K+    + E +  + C      V V +    +  P    + +  T VP TS+P
Sbjct: 802  QPVISSRKEQKKSE-EKNINDHCVTTEQSVVVTNVTTTINTPTTSVISMSGTTVPITSLP 860

Query: 1001 YTNGVKFSITLDGENVRVAVTRL 1023
             ++    SIT++ + +    T++
Sbjct: 861  ASSTSINSITVEKDVINDVKTQI 883


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 579 AIVIPPLLEKFKTSLNSLTEPHRVTAAMSGLAAVARPM 616
           A+++PP++E F T    L+E  R T  + G+AA   P+
Sbjct: 606 AVIVPPIIEPF-TFQEGLSEGMR-TRTVCGVAAGDPPL 641


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 887 EWKSSTK-DYSAAPQTWLPVRE 907
           +W +ST   +S   +TWLPV E
Sbjct: 427 QWDNSTSAGFSQTNKTWLPVNE 448


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 537,811
Number of Sequences: 429
Number of extensions: 22175
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 6
length of query: 2053
length of database: 140,377
effective HSP length: 68
effective length of query: 1985
effective length of database: 111,205
effective search space: 220741925
effective search space used: 220741925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)