Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005012-TA|BGIBMGA005012-PA|IPR008165|Protein of unknown
function GLTT
(956 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 36 0.027
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 35 0.047
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 34 0.081
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 33 0.19
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 32 0.33
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 31 0.57
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 878 VDAAYLVAIPTADCLVVTPAVIAACLVVTPVVVAACLFVTPAVIAACLVVSS 929
+ A + I A C+ VT +A C+ VT + +A C+ +T +A C+ V++
Sbjct: 162 IKAVKVTVIFLAQCIKVTVVFLAQCVKVTSISLAKCVKLTAVFLAQCVKVTA 213
Score = 34.3 bits (75), Expect = 0.081
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 889 ADCLVVTPAVIAACLVVTPVVVAACLFVTPAVIAACLVVSS 929
A C+ VT +A C+ +T V +A C+ VT +A C+ V S
Sbjct: 184 AQCVKVTSISLAKCVKLTAVFLAQCVKVTAVFLAQCVKVIS 224
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 869 AACLVVTPA--VDAAYLVAIPTADCLVVTPAVIAACLVVTPVVVAACLFV 916
A C+ VT + +I A C+ +T +A C+ VT V +A C+ V
Sbjct: 173 AQCIKVTVVFLAQCVKVTSISLAKCVKLTAVFLAQCVKVTAVFLAQCVKV 222
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 35.1 bits (77), Expect = 0.047
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 889 ADCLVVTPAVIAACLVVTPVVVAACLFVTPAVIAACLVVSS 929
A C+ VT +A C+ VT + +A C+ VT +A C+ V++
Sbjct: 147 AQCIKVTVIFLAQCVKVTAISLAQCVKVTAVFLAKCVKVTA 187
Score = 34.7 bits (76), Expect = 0.062
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 889 ADCLVVTPAVIAACLVVTPVVVAACLFVTPAVIAACLVV 927
A C+ VT +A C+ VT V +A C+ VT +A C+ V
Sbjct: 158 AQCVKVTAISLAQCVKVTAVFLAKCVKVTAVFLAKCVKV 196
Score = 31.5 bits (68), Expect = 0.57
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 869 AACLVVTPA--VDAAYLVAIPTADCLVVTPAVIAACLVVTPVVVAACLFV 916
A C+ VT + AI A C+ VT +A C+ VT V +A C+ V
Sbjct: 147 AQCIKVTVIFLAQCVKVTAISLAQCVKVTAVFLAKCVKVTAVFLAKCVKV 196
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 899 IAACLVVTPVVVAACLFVTPAVIAACLVVSS 929
+A C+ VT + +A C+ VT +A C+ V++
Sbjct: 146 VAQCIKVTVIFLAQCVKVTAISLAQCVKVTA 176
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 34.3 bits (75), Expect = 0.081
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 889 ADCLVVTPAVIAACLVVTPVVVAACLFVTPAVIAACLVV 927
A C+ VT +A C+ VT + +A C+ VT +A C+ V
Sbjct: 148 AQCIKVTVIFLAQCVKVTVIFLAQCVKVTAVFLAKCVKV 186
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 899 IAACLVVTPVVVAACLFVTPAVIAACLVVSS 929
+A C+ VT + +A C+ VT +A C+ V++
Sbjct: 147 VAQCIKVTVIFLAQCVKVTVIFLAQCVKVTA 177
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 33.1 bits (72), Expect = 0.19
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 287 PGSDSGCHRP-LPGEDPGCHCRLPGRDSGCRLPGRDSGYRLPGRDSGYRLPGRDSGYRQP 345
PGS S P +P G R P +G R P ++G R P +SG + P +SG R P
Sbjct: 798 PGSISTADGPNVPNWAQGA--RTPAVANGSRTPAWNTGSRTPAWNSGSKTPAWNSGSRTP 855
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 307 RLPGRDSGCRLPGRDSGYRLPGRDSGYRLPGRDSGYRQP 345
R P ++G R P +SG + P +SG R P +SG + P
Sbjct: 826 RTPAWNTGSRTPAWNSGSKTPAWNSGSRTPAWNSGNKTP 864
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 307 RLPGRDSGCRLPGRDSGYRLPGRDSGYRLPGRDSGYRQP 345
R P +SG + P +SG R P +SG + P ++G R P
Sbjct: 835 RTPAWNSGSKTPAWNSGSRTPAWNSGNKTPAWNAGSRTP 873
Score = 31.5 bits (68), Expect = 0.57
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 307 RLPGRDSGCRLPGRDSGYRLPGRDSGYRLPGRDSGYRQP 345
+ P +SG R P +SG + P ++G R P +SG + P
Sbjct: 844 KTPAWNSGSRTPAWNSGNKTPAWNAGSRTPAWNSGNKTP 882
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 307 RLPGRDSGCRLPGRDSGYRLPGRDSGYRLPGRDSGYRQP 345
R P +SG + P ++G R P +SG + P + G + P
Sbjct: 853 RTPAWNSGNKTPAWNAGSRTPAWNSGNKTPAWNVGNKTP 891
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 824 RLPGRDSGCRLPGRDSGCRLPGRDSGCRLP 853
R P ++G R P +SG + P +SG R P
Sbjct: 826 RTPAWNTGSRTPAWNSGSKTPAWNSGSRTP 855
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 307 RLPGRDSGCRLPGRDSGYRLPGRDSGYRLPGRDSGYRQP 345
+ P ++G R P +SG + P + G + P +SG + P
Sbjct: 862 KTPAWNAGSRTPAWNSGNKTPAWNVGNKTPAWNSGAKTP 900
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 693 LAVIAAFVVVTLAVIAAFVVVTLA-VIAAFVVVTLAVIAAFVVVTLAVI 740
++++ A+V V +A + + T+A VIAAF V+ A IA + + ++
Sbjct: 176 ISMVIAWVGVVIAAFSVIITATIAGVIAAFSVIITATIAGVIAAMVGIL 224
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 704 LAVIAAFVVVTLAVIAAFVVVTLA-VIAAFVVVTLAVIAAFV 744
++++ A+V V +A + + T+A VIAAF V+ A IA +
Sbjct: 176 ISMVIAWVGVVIAAFSVIITATIAGVIAAFSVIITATIAGVI 217
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 693 LAVIAAFVVVTLAVIAAFVVVTLAVIAAFVVVTLAVIAAFVVVTLA-VIAAFVVV 746
+ +++AF + +I A ++++ + A+V V +A + + T+A VIAAF V+
Sbjct: 156 ILLLSAFNYCSKLIIKALPLISMVI--AWVGVVIAAFSVIITATIAGVIAAFSVI 208
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 672 AVIAASLLVTTAVITACLMVTLA-VIAAFVVVTLAVIAAFVVVTLAVI--AAFVVVTLAV 728
+++ A + V A + + T+A VIAAF V+ A IA + + ++ ++V + +
Sbjct: 177 SMVIAWVGVVIAAFSVIITATIAGVIAAFSVIITATIAGVIAAMVGILYFGHWLVYKILI 236
Query: 729 IA-AFVVVT 736
+A F +VT
Sbjct: 237 LAFGFKIVT 245
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 31.5 bits (68), Expect = 0.57
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 668 CSTTAVIAASLLVTTAVITACLMVTLAVIAAFVVVTLAVIAAFVVVTLAVIAAFVVVTLA 727
CS +V A +V TAVI + + +I A+ TL I + + + ++ A++V +
Sbjct: 292 CSNASVNAPKAIVMTAVIGGVVGWIMQIIVAY---TLTDIDSVMNTSGSMWTAYLVQAMP 348
Query: 728 VIAAFVVVTLAVIAAFVV 745
AA +++L +I+A ++
Sbjct: 349 PKAALGILSLTIISAIIM 366
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.326 0.139 0.447
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,762,553
Number of Sequences: 5004
Number of extensions: 141191
Number of successful extensions: 336
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 40
length of query: 956
length of database: 2,362,478
effective HSP length: 80
effective length of query: 876
effective length of database: 1,962,158
effective search space: 1718850408
effective search space used: 1718850408
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)
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