GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005012-TA|BGIBMGA005012-PA|IPR008165|Protein of unknown
function GLTT
         (956 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    27   0.96 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   2.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   2.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   2.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    25   3.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   8.9  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 26.6 bits (56), Expect = 0.96
 Identities = 13/53 (24%), Positives = 29/53 (54%)

Query: 677 SLLVTTAVITACLMVTLAVIAAFVVVTLAVIAAFVVVTLAVIAAFVVVTLAVI 729
           SL ++  +      + LA I     +T+ ++  +++ T+ ++   VVVT+AV+
Sbjct: 269 SLSISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMVLVTLSVVVTIAVL 321



 Score = 25.8 bits (54), Expect = 1.7
 Identities = 12/52 (23%), Positives = 29/52 (55%)

Query: 689 LMVTLAVIAAFVVVTLAVIAAFVVVTLAVIAAFVVVTLAVIAAFVVVTLAVI 740
           L +++ +      + LA I     +T+ ++  +++ T+ ++   VVVT+AV+
Sbjct: 270 LSISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMVLVTLSVVVTIAVL 321


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 879 DAAYLVAIPTADCLVVTPAVIAACLVV----TPVVVAACLFVTPAVIAACLV 926
           ++A+ +A     CL +   +  ACL+     TPVV A+   +T  ++A  LV
Sbjct: 512 NSAFAIAPAVISCLGIVATMAVACLLFHHRDTPVVRASGRELTIILLAGVLV 563


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 680 VTTAVITACLMVTLAVIAAFVVVTLAVIAAFVVVTLAVIAAFVVVTLAVIAAFVVVTLAV 739
           VT A++ A ++ ++ ++   +   L  +A F+V  L     +++V+LAV    V + +  
Sbjct: 38  VTQAILIALVLGSI-IVGTVIGNILVCVAVFLVRKLRRPCNYLLVSLAVSDLCVALLVMP 96

Query: 740 IAAFVVVTG 748
           +A    ++G
Sbjct: 97  MALLYEISG 105


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 879 DAAYLVAIPTADCLVVTPAVIAACLVV----TPVVVAACLFVTPAVIAACLV 926
           ++A+ +A     CL +   +  ACL+     TPVV A+   +T  ++A  LV
Sbjct: 602 NSAFAIAPAVISCLGIVATMAVACLLFHHRDTPVVRASGRELTIILLAGVLV 653


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 660 RRLPDAWSCSTTAVIAASLLVTTAVITACLMVTL 693
           RRL    +C  +++ AA LLV  AV+   +++ L
Sbjct: 66  RRLRSVTNCFVSSLAAADLLVGLAVMPPAVLLQL 99


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 684 VITACLMVTLAVIAAFVVVTLAVIAAFVVVT 714
           VIT     TLA I A  + + A+I   +V+T
Sbjct: 424 VITVSFTATLASIGAASIPSAALITMLIVLT 454


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.139    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,281
Number of Sequences: 429
Number of extensions: 9640
Number of successful extensions: 32
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 8
length of query: 956
length of database: 140,377
effective HSP length: 64
effective length of query: 892
effective length of database: 112,921
effective search space: 100725532
effective search space used: 100725532
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 48 (23.4 bits)