Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005010-TA|BGIBMGA005010-PA|IPR010971|Ubiquinone
biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, IPR003042|Aromatic-ring
hydroxylase, IPR002938|Monooxygenase, FAD-binding
(309 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 172 5e-44
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 33 0.052
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 27 2.6
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 27 3.4
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 3.4
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr... 27 4.5
SPAC29B12.04 |snz1||pyridoxine biosynthesis protein|Schizosaccha... 27 4.5
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 26 7.8
>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 466
Score = 172 bits (419), Expect = 5e-44
Identities = 103/270 (38%), Positives = 142/270 (52%), Gaps = 5/270 (1%)
Query: 44 MVIGADGANSAVRRAMGVQYLSWNYDQMGVLATLYLAEETDNTTAWQRWLPSGPIAILPL 103
++IGADG NS VR+ + WNY V+ TL + A+QR+LP+GP+A LPL
Sbjct: 194 LLIGADGRNSIVRKYANISMPGWNYLTHAVVGTLKIDPLKGPAVAFQRFLPTGPLAYLPL 253
Query: 104 DSQRSSLVWSTWEDNAKRLLKLPEEQFVDELNDALWKQYPRSGAVEGC----MSWVSGCL 159
++ VWST A +LL+LPEE FV LN + YP + S V+ L
Sbjct: 254 PDNNATFVWSTRPHIASKLLRLPEETFVKFLNASFRLDYPDLSYLYQMDFSEPSKVNEQL 313
Query: 160 R-RAGLPDGAARQLPPSVQGVASSSRAAFPLAFGHSTRYVANGVALVGDAAHRVHPLAGQ 218
R + + Q+PP + + S SRAAFPL H YV G+AL GDAAH HPLAGQ
Sbjct: 314 DWRLQVKRNSNMQVPPVITEIVSGSRAAFPLRLAHVDEYVKEGIALCGDAAHNTHPLAGQ 373
Query: 219 GVNLGFGDVKELTELLADATYGGFDINDPSYLQRYESNRQRHNVPTQLAIEALHRLYTVD 278
G+N G DV+ L L+ A G DI LQ Y +R N ++ H+LY ++
Sbjct: 374 GLNTGIQDVESLISALSFAIKHGQDIGSVFSLQPYFRDRYFKNHVYLGVVDKFHKLYAME 433
Query: 279 LPPVVLLRSVGLQLTNALHPVKKLLMSHAA 308
P V +R++GL L + +K ++S A
Sbjct: 434 NPVVTSVRTLGLSLFDRSASLKNFILSTVA 463
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 33.1 bits (72), Expect = 0.052
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 171 QLPPSVQGVASSSRA-AFPLAFGHSTRYVANGVALVGDAAHRVHPLAGQGVNLGFGDVKE 229
+L PS++ + R + P F T G+ LVGD+ + HPL G G+ + F D
Sbjct: 256 KLRPSLKAAVYNDRLRSMPNQFLPPTVNRTKGMILVGDSNNMRHPLTGGGMTVCFHDAYL 315
Query: 230 LTELLADATYGGFDIND----PSYLQRYESNRQRHNVPTQLAIEALHRLYT 276
L+ ++ + D+ D + + ++ R+ ++ + AL++L+T
Sbjct: 316 LSRFISPSAVP--DLLDYERILNQMNKFHWKRKGYSFVINVLSIALYKLFT 364
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 104 DSQRSSLVWSTWEDNAKRLLKLPEE 128
D + ++ W W+DN +R +KL +E
Sbjct: 499 DHRLLTIAWEAWKDNYQRRIKLQKE 523
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 82 ETDNTTAWQRWLPSGPIAILPLDSQRSSLVWSTWEDNAKRLLKLPE 127
+TD T PS ++ILP+ + +SL+ ++ N K + LPE
Sbjct: 245 QTDGTYRSYVHNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPE 290
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 240 GGFDINDPSYLQRYESN-RQRHNVPTQLAIEALH 272
G F + DPSY+ ++E N +R PT A A H
Sbjct: 362 GSFWMLDPSYIDQFEGNFFRRTKKPTPSATPAAH 395
>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 116 EDNAKRLLKLPEEQFVDELNDALWKQYPRSGAVEGC 151
E+ ++KL E+Q + E+ND +Q+ +SG E C
Sbjct: 41 EEKFDAVIKLDEKQ-LSEMNDWCIEQHGKSGLTERC 75
>SPAC29B12.04 |snz1||pyridoxine biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 178 GVASSSRAAFPLAFGHSTRYVANGVALVGDAAHRVHPLAGQGVNLGFGDVKELTEL 233
GVA+ + AA + G +V +G+ L GD A R + + + D K L E+
Sbjct: 216 GVATPADAALMMQLGCDGVFVGSGIFLSGDPAKRARAIVRAVTH--YNDPKILAEV 269
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 99 AILPLDSQRSSLVWSTWEDNAKRLLKLPEEQFVDELNDA 137
+I+P DS+ ++V + DNA RL V +L+DA
Sbjct: 396 SIIPNDSKSDNVVLVSTNDNAIRLYNTVTHALVLKLSDA 434
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.133 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,023
Number of Sequences: 5004
Number of extensions: 57064
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 9
length of query: 309
length of database: 2,362,478
effective HSP length: 73
effective length of query: 236
effective length of database: 1,997,186
effective search space: 471335896
effective search space used: 471335896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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