GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005004-TA|BGIBMGA005004-PA|IPR003689|Zinc/iron permease
         (96 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   0.66 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   0.66 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   0.87 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   2.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   2.7  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   3.5  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   3.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   4.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   8.1  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 0.66
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 6   SHDHDDDTDGIVLAKGISM 24
           SH   D  DGIVLA GI++
Sbjct: 280 SHRSIDVKDGIVLATGITV 298


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 0.66
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 6   SHDHDDDTDGIVLAKGISM 24
           SH   D  DGIVLA GI++
Sbjct: 280 SHRSIDVKDGIVLATGITV 298


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 0.87
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 42  ARKFRWLSVEDAGTFKSTNRVVMTLLSFG 70
           A + RW SV+   T   T ++  T L FG
Sbjct: 87  AHRIRWESVQKEVTVTGTYQLTETELVFG 115


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 8/27 (29%), Positives = 17/27 (62%)

Query: 64  MTLLSFGGGVLLSTTFMHVMPEVQENI 90
           +TL+SF G +L+    M ++P +  ++
Sbjct: 93  ITLISFPGELLMRLLKMFILPLIVSSL 119


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 59   TNRVVMTLLSFGGGVL 74
            TNRV   + SFGG V+
Sbjct: 1309 TNRVPARITSFGGHVV 1324


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 59   TNRVVMTLLSFGGGVL 74
            TNRV   + SFGG V+
Sbjct: 1305 TNRVPARITSFGGHVV 1320


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
          protein.
          Length = 105

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 37 IPQIIARKFRWLSVEDAGTFKSTNRV 62
          +P +  RKF+ ++  +  TFK+  +V
Sbjct: 71 LPSLPDRKFQTVTSIEGNTFKTETQV 96


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
          protein protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 37 IPQIIARKFRWLSVEDAGTFKSTNRV 62
          +P +  RKF+ ++  +  TFK+  +V
Sbjct: 73 LPSLPDRKFQTVTSIEGNTFKTETQV 98


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 3   YRHSHDHDDDTDGI 16
           Y+H  DH    DG+
Sbjct: 94  YQHQQDHGSGMDGM 107


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.4 bits (38), Expect = 8.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)

Query: 80  MHVMPEVQENIE 91
           ++V PE QEN++
Sbjct: 643 LNVYPEFQENVQ 654


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.138    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,115
Number of Sequences: 429
Number of extensions: 892
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 96
length of database: 140,377
effective HSP length: 49
effective length of query: 47
effective length of database: 119,356
effective search space:  5609732
effective search space used:  5609732
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.7 bits)
S2: 38 (19.4 bits)