GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005000-TA|BGIBMGA005000-PA|undefined
         (83 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    20   4.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   4.7  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
          determiner protein.
          Length = 191

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 6  EMVYRELGNLLEEFSTLALSSEQPEKTTNNFK 37
          E +Y E   LLEE ++    S   E+   ++K
Sbjct: 20 EKLYNEKEKLLEERTSRKRYSRSREREQKSYK 51


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 50  RGIPNATAAAVNIVRMYI 67
           +GIP +   A+N+   Y+
Sbjct: 545 KGIPCSWGRAINVANRYV 562


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.128    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,797
Number of Sequences: 429
Number of extensions: 697
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 83
length of database: 140,377
effective HSP length: 47
effective length of query: 36
effective length of database: 120,214
effective search space:  4327704
effective search space used:  4327704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.7 bits)
S2: 37 (19.0 bits)