GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004997-TA|BGIBMGA004997-PA|IPR001752|Kinesin, motor
region
         (153 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   0.60 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   0.60 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.8  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   4.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   5.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 0.60
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 7/44 (15%)

Query: 66  SACSPNQLTYASQDKVFETIGCEVLNSVYRGYSACVLAYGQSAT 109
           S C+  ++ Y  ++K       EVL+++  GY A +   G++AT
Sbjct: 19  SRCTQGKVNYREKEK-------EVLDNILGGYDARIRPSGENAT 55


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 0.60
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 7/44 (15%)

Query: 66  SACSPNQLTYASQDKVFETIGCEVLNSVYRGYSACVLAYGQSAT 109
           S C+  ++ Y  ++K       EVL+++  GY A +   G++AT
Sbjct: 19  SRCTQGKVNYREKEK-------EVLDNILGGYDARIRPSGENAT 55


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 101 VLAYGQSATGKTHTMMGTEAQPGLVPRIC 129
           +L Y  SA    H +  T+  PG    +C
Sbjct: 514 ILVYEPSACRPRHEIRSTDVIPGTQEHVC 542


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
          protein.
          Length = 95

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 65 DSACSPNQLTYASQDKVFETIGC 87
          DSAC+ N L+        E +GC
Sbjct: 57 DSACAANCLSLGKAGGHCEKVGC 79


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 14  TDKELKSEKERVRVVNVLDSK 34
           T+  LKS+  +V ++ +LDSK
Sbjct: 345 TESVLKSKIGQVFLITILDSK 365


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 90  LNSVYRGYSACVLAYGQSATGKTHTMMGTEAQPGLVPRICRAL 132
           L S+Y G S C++ +  +    T  +     +   VP I R+L
Sbjct: 274 LISLYYGVSICLVTFASALAVVTLNLHHRGVRGTRVPGIVRSL 316


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.131    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,584
Number of Sequences: 429
Number of extensions: 1922
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 153
length of database: 140,377
effective HSP length: 53
effective length of query: 100
effective length of database: 117,640
effective search space: 11764000
effective search space used: 11764000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)