GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004995-TA|BGIBMGA004995-PA|IPR001926|Pyridoxal-5'-
phosphate-dependent enzyme, beta subunit
         (182 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    31   0.007
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.007
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 25  IIVPSQGNMALGAAYHASFFGIPVTVVLPDRTSPALAHRCTELGADVV 72
           II P+ GN  +G A  A+  G    +V+P++ S         LGA ++
Sbjct: 101 IIEPTSGNTGIGLAMAAAVRGYKCIIVMPEKMSDEKISTLYALGAKII 148


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 10  RNALVAYGEKIMDRGIIVPSQ-----GNMALGAAYHASFF 44
           R  +++  EKI +   IVP +     GN+ +   Y   FF
Sbjct: 848 RETIISAAEKIAEELKIVPEELVPLEGNLMINNKYALKFF 887


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,029
Number of Sequences: 429
Number of extensions: 1597
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 182
length of database: 140,377
effective HSP length: 54
effective length of query: 128
effective length of database: 117,211
effective search space: 15003008
effective search space used: 15003008
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)