GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004993-TA|BGIBMGA004993-PA|IPR001533|Transcriptional
coactivator/pterin dehydratase, IPR013822|GTP-binding signal
recognition particle SRP54, helical bundle, IPR006325|Signal
recognition particle protein SRP54, IPR000897|GTP-binding signal
recognition particle SRP54, GTPase, IPR004125|GTP-binding signal
recognition particle SRP54, M-domain, IPR003593|AAA ATPase
         (705 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    29   0.098
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   4.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 29.5 bits (63), Expect = 0.098
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 5/131 (3%)

Query: 330  RAMYEQFQNIMKMGPFSQIMGMIPG--FSQDLMSKGSEQESMAKLKLLMTIMDSMNEGEL 387
            R +  Q Q+I   G   +I+  I G   +  +     +Q+   + K+L  ++ S N G+L
Sbjct: 1068 RVVTNQQQSIQTSG-MQRIIAQIGGKPIAVQIQQSPHQQQQQQQQKILAKVLTSSNSGQL 1126

Query: 388  DNRDGAKLFSKQPTRITRVAQGAGVTERDVKDLIAQYTKFAAVVKKMGGIKGLFKGGDMA 447
             + +   L +++  ++   A  A    R  K +I    +  +  +   G   +       
Sbjct: 1127 ISVE--NLLAQKGLKLATTASHANQLNRQGKQVIQTQYQVVSQAQTSSGQSKIIASTQQQ 1184

Query: 448  KNVNQTQMVKL 458
            +   Q Q V++
Sbjct: 1185 QQSQQAQTVRM 1195


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 101 PNVIMFVGLQGSGKTTTCTKLAYHYLRK 128
           P+++++    G    TT TK   HY  K
Sbjct: 105 PDIVLYNNADGEYGVTTMTKAILHYTGK 132


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,928
Number of Sequences: 429
Number of extensions: 6813
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 3
length of query: 705
length of database: 140,377
effective HSP length: 63
effective length of query: 642
effective length of database: 113,350
effective search space: 72770700
effective search space used: 72770700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)