GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004992-TA|BGIBMGA004992-PA|IPR004141|Strictosidine
synthase
         (685 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             28   0.29 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    26   0.89 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   3.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   4.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   6.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.9 bits (59), Expect = 0.29
 Identities = 11/52 (21%), Positives = 25/52 (48%)

Query: 420  PVQKEATVEKREIKTEAPKPIEQHKPTQKQHEKKPTAEAPQKSQPTVEPAKP 471
            P  K++  + + I   + +  +Q +P Q+Q +++      Q  QP  +  +P
Sbjct: 1480 PTDKKSACDSKLIVDHSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQP 1531


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 26.2 bits (55), Expect = 0.89
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 631 NLVQ-KDTPKIRAGVKSATQEIPIKEEIPSDTAKPNKETLKVIK 673
           N+VQ ++TP++   + +    IP++ +  SD  + +   +   K
Sbjct: 96  NIVQFRNTPEVHQAINTCQPSIPLEPDFTSDVTERDNHLVNAFK 139


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 619  KTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDTAKPNKETL-KVIKKDGP 677
            K +S Q   + +   Q+ T       KS  Q   IK++ P     P K  L   IK   P
Sbjct: 971  KVQSQQQSQQSQQQQQQQTIVTNQAGKSILQTANIKQQSPQQHVLPGKTLLASQIKLVSP 1030

Query: 678  TEI 680
             +I
Sbjct: 1031 GQI 1033



 Score = 23.0 bits (47), Expect = 8.3
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 409 PKTASKIEQTKPVQKEATVEKREIKTEAPKPIEQHKPTQKQHEKK 453
           P   +K EQ+    KE T +K        +P+   +  QK+ E+K
Sbjct: 774 PANVNK-EQSPNSTKETTPKKERKTATTTQPVISSRKEQKKSEEK 817


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 390 PAPPQLLRAFSKTVETKEIPKTASKIEQTKPVQKEATVEKREIKTEAPKPIEQHKPTQKQ 449
           P  P +LR   K +      +T + +   K +  + T ++++++ +     +QH+  Q+Q
Sbjct: 379 PQHPDILRELLKKIPDL---RTLNTLHSEKLLAFKMTEQQQQMQAQ-----QQHQQQQQQ 430

Query: 450 HEKKPTAEAPQKSQ 463
            +    A+ PQ+ Q
Sbjct: 431 TQHVINAQQPQQQQ 444


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 410 KTASKIE-QTKPVQKEATVEKREIKTEAPKPIEQHKPTQ---KQHEKKPTAEAP 459
           K   +IE + K + K   +EKRE ++ + K I   +P Q   +  EK+ +A  P
Sbjct: 577 KERGEIEVKGKGIMKTYWLEKREHRSSSTKGITIQEPPQWHTRSTEKRVSAGTP 630


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,741
Number of Sequences: 429
Number of extensions: 8066
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 685
length of database: 140,377
effective HSP length: 62
effective length of query: 623
effective length of database: 113,779
effective search space: 70884317
effective search space used: 70884317
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)