GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004989-TA|BGIBMGA004989-PA|IPR000571|Zinc finger,
CCCH-type
         (394 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    27   0.21 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      27   0.28 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    25   1.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    25   1.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   2.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   7.9  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 0.21
 Identities = 17/59 (28%), Positives = 24/59 (40%)

Query: 264 SGHPSYPHSTSTGYPNAPPNTPIVQNPYATVMSPTKRQWTEMEEPVSQPTHEYAEYAEM 322
           S  P   H   T  PN  P+TPIV        +    Q + ++ P S P  E   + +M
Sbjct: 114 SPSPGMGHMGHTPTPNGHPSTPIVYASCKLQAAAVDHQGSVLDGPDSPPLVESQMHHQM 172


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 27.1 bits (57), Expect = 0.28
 Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 14/133 (10%)

Query: 212 ELSANYTGTTYPHSTTSVPMYTNASNISMMQNPYEKQWPEMEDKSSPEMAYYSGHPSYPH 271
           EL  +Y    + +S    P + +  +    QN Y    P+M      E+     H SY H
Sbjct: 111 ELQTDYDRRLHDNS----PSFLSDHSRDQEQNLYLTPSPQMYSSGGEEITPRQSHQSYHH 166

Query: 272 STSTGY-PNAPPNTPIVQNP-YATVMSPTKRQWTEMEEPVSQPTHEYAEYAEMAGSKKCR 329
             S  Y P      P V+   Y  V      + ++M EP S  T  Y       G +K +
Sbjct: 167 MDSVEYKPEIMEYKPDVEEQRYKQV------EISQMTEP-SSSTKSYVLEGPRNGKRKRK 219

Query: 330 NCDV-NEFRFQHN 341
           +  + NE   + N
Sbjct: 220 SSTIENESETESN 232


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 205 KTKETSSELSANYTGTTYPHSTTSVPMYTNASNISMMQNP 244
           ++KET    S NY    Y ++  S  +Y N  NI  +  P
Sbjct: 297 RSKETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQIPVP 336


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 205 KTKETSSELSANYTGTTYPHSTTSVPMYTNASNISMMQNP 244
           ++KET    S NY    Y ++  S  +Y N  NI  +  P
Sbjct: 308 RSKETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQIPVP 347


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 264  SGHPSYPHSTSTGYPNAPPNTPIVQNPYATVMSPTKRQWTEMEEPVSQPTHEYAEYAEMA 323
            SGH S  HS  +   ++  N   V     T++ P K Q  +  +   Q   +       A
Sbjct: 937  SGH-SVLHSAQSVVASSASNVTNVTTNLTTILPPVKVQSQQQSQQSQQQQQQQTIVTNQA 995

Query: 324  GSKKCRNCDVNE 335
            G    +  ++ +
Sbjct: 996  GKSILQTANIKQ 1007


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 246 EKQWPEMEDKSSPEMAYYSGHPSYPHS 272
           E +W E+  ++S E   +S H  YP +
Sbjct: 19  EDRWEEIRRQASVEQPSFSVHQVYPEN 45


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 250 PEMEDKSSPEMAYYSGHPSYPHSTSTGYPNAPPNTPIVQNP--YATVMSPT 298
           PE E     E+ +++   +   STS  YP    ++P   +P  + + +SPT
Sbjct: 57  PE-ESSGGVELGWFNDSAAAITSTSPSYPGGGSSSPSPSSPSSFFSSVSPT 106


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 13  EDSVNFRPSPNFRLMKKYLKYKIGEESHSPQ 43
           +DS     S  F    +Y KY I +ES S Q
Sbjct: 217 DDSFQRLTSSTFVYDPRYTKYTINDESFSLQ 247


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.127    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,765
Number of Sequences: 429
Number of extensions: 5656
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 8
length of query: 394
length of database: 140,377
effective HSP length: 59
effective length of query: 335
effective length of database: 115,066
effective search space: 38547110
effective search space used: 38547110
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)