GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004987-TA|BGIBMGA004987-PA|IPR010678|Protein of unknown
function DUF1253
         (748 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                27   0.56 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    25   3.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.1 bits (57), Expect = 0.56
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 661 HFFRRFRIKGIRHIIFYQPPTYPHFYSEMCNLMQES 696
           H     + + ++H+ + QPPT    YS   N M  S
Sbjct: 351 HHHHHHQTQSLQHLHYRQPPTLSESYSSYVNSMYAS 386


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 141 DFDNTATFETELDHETDDSFVKHLQYD 167
           ++D+T  +  ++D   D +FV  L+YD
Sbjct: 59  EYDHTKNYPFDVDQWRDKTFVTILRYD 85


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,808
Number of Sequences: 429
Number of extensions: 7615
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 2
length of query: 748
length of database: 140,377
effective HSP length: 63
effective length of query: 685
effective length of database: 113,350
effective search space: 77644750
effective search space used: 77644750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)