Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA004985-TA|BGIBMGA004985-PA|IPR007832|RNA polymerase
Rpc34 subunit
(293 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
L10430-1|AAA27731.1| 150|Apis mellifera transposase protein. 30 0.021
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 27 0.15
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 27 0.15
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 23 2.4
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 2.4
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 23 3.2
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 23 3.2
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 23 4.2
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 23 4.2
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 22 5.6
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 21 9.8
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 21 9.8
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 9.8
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 9.8
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 21 9.8
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 9.8
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 21 9.8
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 21 9.8
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 9.8
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 9.8
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 21 9.8
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 21 9.8
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 9.8
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 21 9.8
>L10430-1|AAA27731.1| 150|Apis mellifera transposase protein.
Length = 150
Score = 30.3 bits (65), Expect = 0.021
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 7 KEKILNLARKSSKGITDKDIIAEIPGISSV---ELVTALNDLLKQERFDLFNQNGSLIY 62
++K+L L KGI +++ I+SV E +T LN+ ++++RF+L N+ G + +
Sbjct: 64 RKKVLLLVWWDHKGIVYFELLPPNRTINSVVYIEHLTKLNNAIEEKRFELTNRKGVVFH 122
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 27.5 bits (58), Expect = 0.15
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 43 NDLLKQERFDLFNQNGSLIYKLKTQTNKHAIKGADNEEKVVYNLIEE 89
N + Q RF + N S +Y+LK +T H + G++ E L +E
Sbjct: 1549 NSVKMQRRFVVTNLQPSSVYQLKVET--HNVAGSNQAEFTFVTLTKE 1593
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 27.5 bits (58), Expect = 0.15
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 43 NDLLKQERFDLFNQNGSLIYKLKTQTNKHAIKGADNEEKVVYNLIEE 89
N + Q RF + N S +Y+LK +T H + G++ E L +E
Sbjct: 1545 NSVKMQRRFVVTNLQPSSVYQLKVET--HNVAGSNQAEFTFVTLTKE 1589
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 23.4 bits (48), Expect = 2.4
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 99 DIRIRSNLANTQLTKVLKN-LES 120
D R RSN +NT T +L N LES
Sbjct: 86 DSRDRSNTSNTSKTVILSNKLES 108
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 23.4 bits (48), Expect = 2.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 47 KQERFDLFNQNGSLIYKLKTQTNKHAIKGAD 77
++ RF F+Q G L+Y+ +H I+ D
Sbjct: 502 EERRFFSFHQWGILVYEPSACRPRHEIRSTD 532
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 23.0 bits (47), Expect = 3.2
Identities = 16/77 (20%), Positives = 33/77 (42%)
Query: 68 TNKHAIKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLESKKVIKAV 127
++K + + E+K N E + R R ++ +K++ +L +K +
Sbjct: 268 SHKRYSRSREREQKSYKNEREYRKYRETSKERFRDRRERERSKESKIISSLSNKTIHNNN 327
Query: 128 KCVNASKKKVYMLYNLE 144
N +KK Y + N+E
Sbjct: 328 NYKNYNKKLYYNIINIE 344
Score = 21.4 bits (43), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 99 DIRIRSNLANTQLTKVLKN-LES 120
D R RSN +NT T +L + LES
Sbjct: 86 DSRDRSNASNTSKTVILSDKLES 108
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 23.0 bits (47), Expect = 3.2
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 99 DIRIRSNLANTQLTKVLKN-LES 120
D R RSN +NT T +L N LES
Sbjct: 86 DSRDRSNTSNTSKTIILSNKLES 108
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 22.6 bits (46), Expect = 4.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 99 DIRIRSNLANTQLTKVLKN 117
D R RSN +NT T +L N
Sbjct: 86 DSRDRSNTSNTSKTVILSN 104
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 22.6 bits (46), Expect = 4.2
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 85 NLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKNLES 120
+L+E + NK + ++ N AN + N+ES
Sbjct: 85 SLVEFSENKNCNAGSLTVKKNFANKYCGNITLNIES 120
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 22.2 bits (45), Expect = 5.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 99 DIRIRSNLANTQLTKVLKN 117
D R RSN +NT T +L N
Sbjct: 86 DSRDRSNTSNTSKTIILSN 104
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.4 bits (43), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 99 DIRIRSNLANTQLTKVLKN-LES 120
D R RSN +NT T +L + LES
Sbjct: 86 DSRDRSNTSNTSKTVILSDKLES 108
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.4 bits (43), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 99 DIRIRSNLANTQLTKVLKN-LES 120
D R RSN +NT T +L + LES
Sbjct: 86 DSRDRSNASNTSKTVILSDKLES 108
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 99 DIRIRSNLANTQLTKVLKN-LES 120
D R RSN +NT T +L + LES
Sbjct: 86 DSRDRSNTSNTSKTVILSDKLES 108
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 99 DIRIRSNLANTQLTKVLKN-LES 120
D R RSN +NT T +L + LES
Sbjct: 86 DSRDRSNASNTSKTVILSDKLES 108
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 99 DIRIRSNLANTQLTKVLKN-LES 120
D R RSN +NT T +L + LES
Sbjct: 86 DSRDRSNASNTSKTVILSDKLES 108
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 99 DIRIRSNLANTQLTKVLKN-LES 120
D R RSN +NT T +L + LES
Sbjct: 86 DSRDRSNASNTSKTVILSDKLES 108
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 99 DIRIRSNLANTQLTKVLKN-LES 120
D R RSN +NT T +L + LES
Sbjct: 86 DSRDRSNASNTSKTVILSDKLES 108
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.4 bits (43), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 99 DIRIRSNLANTQLTKVLKN-LES 120
D R RSN +NT T +L + LES
Sbjct: 86 DSRDRSNASNTSKTVILSDKLES 108
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.4 bits (43), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 99 DIRIRSNLANTQLTKVLKN-LES 120
D R RSN +NT T +L + LES
Sbjct: 86 DSRDRSNASNTSKTVILSDKLES 108
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.4 bits (43), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 99 DIRIRSNLANTQLTKVLKN-LES 120
D R RSN +NT T +L + LES
Sbjct: 86 DSRDRSNASNTSKTVILSDKLES 108
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 21.4 bits (43), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 99 DIRIRSNLANTQLTKVLKN-LES 120
D R RSN +NT T +L + LES
Sbjct: 86 DSRDRSNASNTSKTVILSDKLES 108
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.4 bits (43), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 99 DIRIRSNLANTQLTKVLKN-LES 120
D R RSN +NT T +L + LES
Sbjct: 86 DSRDRSNASNTSKTVILSDKLES 108
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.4 bits (43), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 99 DIRIRSNLANTQLTKVLKN-LES 120
D R RSN +NT T +L + LES
Sbjct: 86 DSRDRSNTSNTSKTVILSDKLES 108
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 21.4 bits (43), Expect = 9.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 26 IIAEIPGISSVELVTALNDLLKQERFDLFNQN 57
I A+ PG+ + ELV +++ L+ + QN
Sbjct: 346 IAADRPGLRNTELVERMHNKLRNALQTVLAQN 377
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.316 0.133 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,849
Number of Sequences: 429
Number of extensions: 3129
Number of successful extensions: 29
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 25
length of query: 293
length of database: 140,377
effective HSP length: 57
effective length of query: 236
effective length of database: 115,924
effective search space: 27358064
effective search space used: 27358064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)
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