GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004983-TA|BGIBMGA004983-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor
         (169 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                31   0.008
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             28   0.056
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    21   6.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 30.7 bits (66), Expect = 0.008
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 25  THYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPH 59
           +H+  ++ AL      S G YP    F PP  +PH
Sbjct: 285 SHHSHLSSALGRSACHSPGVYPSTAGFLPPSYHPH 319


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.9 bits (59), Expect = 0.056
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 31   APALSNPIPDSVGAYP---PAKPFTPPGVYPHPEGV 63
            A A +N  P +    P   P KPFT PG  P P G+
Sbjct: 1109 AAAATNIRPGTADNKPQLKPQKPFTSPGGIPGPNGI 1144



 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 32   PALSNPIPDSVGAYPPAKP 50
            P +++P P   G Y P +P
Sbjct: 984  PIMTDPSPFKRGRYTPPQP 1002


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
          protein.
          Length = 87

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 5/23 (21%)

Query: 15 PPPYSS-----VVGTTHYGFVAP 32
          PPP +      +VG + YGFV P
Sbjct: 55 PPPNNEDSSGVIVGASGYGFVPP 77


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,363
Number of Sequences: 429
Number of extensions: 2917
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 169
length of database: 140,377
effective HSP length: 53
effective length of query: 116
effective length of database: 117,640
effective search space: 13646240
effective search space used: 13646240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)