GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004982-TA|BGIBMGA004982-PA|IPR001202|WW/Rsp5/WWP
         (272 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 133  LVSWIPPGHPRAVPTE 148
            LVSW PP  P  V T+
Sbjct: 1197 LVSWRPPSQPNGVITQ 1212


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 68  PNKSNIYHECSTFCIKRWKQGKLVPTETYLEHKEKVLELWPLPPGWE 114
           PN   I+++     I RWK G       +L++ E         P WE
Sbjct: 53  PNGMQIWNDKVFITIPRWKNGVPSNLNFFLKNDESESPKLNPYPNWE 99


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 134  VSWIPPGHPRAVPTE 148
            +SW+PP  P  + T+
Sbjct: 1232 ISWLPPLEPNGIITK 1246


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 134  VSWIPPGHPRAVPTE 148
            +SW+PP  P  + T+
Sbjct: 1228 ISWLPPLEPNGIITK 1242


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 46  NENGKDEPWEGFVDPVKGHRGCPNK 70
           N   K + +  +VDPVK  +G P K
Sbjct: 140 NNTNKYKDYYIWVDPVKDDKGNPIK 164


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.132    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,366
Number of Sequences: 429
Number of extensions: 3750
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 272
length of database: 140,377
effective HSP length: 57
effective length of query: 215
effective length of database: 115,924
effective search space: 24923660
effective search space used: 24923660
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 43 (21.4 bits)