GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004980-TA|BGIBMGA004980-PA|IPR002554|Protein phosphatase
2A, regulatory B subunit, B56
         (462 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   9.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   9.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 353 VAERALYFWNNEYIMSLMEENNHVIMPIMFPALYRISKEHWN 394
           V ERAL    N +I+SL   +  V + +M  A+Y +    W+
Sbjct: 212 VRERALQTVTNYFIVSLAVADLLVAVLVMPFAVYVLVNGSWS 253


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 333 KIQEPLFRQIAKCVSSPHF 351
           K +EP   +I++  SSPHF
Sbjct: 613 KYEEPTVGEISQDGSSPHF 631


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.140    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,853
Number of Sequences: 429
Number of extensions: 4591
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 2
length of query: 462
length of database: 140,377
effective HSP length: 60
effective length of query: 402
effective length of database: 114,637
effective search space: 46084074
effective search space used: 46084074
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)