GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004979-TA|BGIBMGA004979-PA|IPR004551|Diphthine synthase,
IPR000878|Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
methyltransferase
         (267 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    28   0.10 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 141 KPDSFFEKIIANYSRNLHTLCLLDIKVKEP 170
           +P S    IIAN +  LH  CLLD++ + P
Sbjct: 268 EPSSTERMIIANLNFILHLFCLLDVQWRIP 297


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 164 DIKVKEPTEESLTKKVRTYMDPKFMSVKD 192
           DIKV      ++   V+++M+    SVKD
Sbjct: 819 DIKVPSTKVLAMISSVKSFMELSLRSVKD 847


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/17 (35%), Positives = 12/17 (70%)

Query: 131 VSIPFWTDTWKPDSFFE 147
           + + +  + W+PDSFF+
Sbjct: 110 LEVDWLKNMWRPDSFFK 126


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 131 VSIPFWTDTWKPDSFFEKIIANYSRNLHTL 160
           +SI      WKPD++F     +Y   LHT+
Sbjct: 77  LSISMLARIWKPDTYFYNGKHSY---LHTI 103


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,993
Number of Sequences: 429
Number of extensions: 2946
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 267
length of database: 140,377
effective HSP length: 57
effective length of query: 210
effective length of database: 115,924
effective search space: 24344040
effective search space used: 24344040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)